Version 5.4
Mus musculus Gene: Hdlbp
Summary
InnateDB Gene IDBG-183219.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Hdlbp
Gene Name high density lipoprotein (HDL) binding protein
Synonyms 1110005P14Rik; AA960365; AI118566; D1Ertd101e
Species Mus musculus
Ensembl Gene ENSMUSG00000034088
Encoded Proteins
IDBP-183221
high density lipoprotein (HDL) binding protein
IDBP-622261
high density lipoprotein (HDL) binding protein
IDBP-787836
high density lipoprotein (HDL) binding protein
IDBP-787838
high density lipoprotein (HDL) binding protein
IDBP-787839
high density lipoprotein (HDL) binding protein
IDBP-787841
high density lipoprotein (HDL) binding protein
IDBP-787842
high density lipoprotein (HDL) binding protein
IDBP-787844
high density lipoprotein (HDL) binding protein
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000115677:
The protein encoded by this gene binds high density lipoprotein (HDL) and may function to regulate excess cholesterol levels in cells. The encoded protein also binds RNA and can induce heterochromatin formation. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 1:93405940-93478815
Strand Reverse strand
Band D
Transcripts
ENSMUST00000042498 ENSMUSP00000043047
ENSMUST00000170883 ENSMUSP00000127903
ENSMUST00000186164 ENSMUSP00000139671
ENSMUST00000189951
ENSMUST00000190321 ENSMUSP00000139448
ENSMUST00000188988 ENSMUSP00000140946
ENSMUST00000186787 ENSMUSP00000139719
ENSMUST00000189025 ENSMUSP00000140399
ENSMUST00000185349
ENSMUST00000188165 ENSMUSP00000139777
ENSMUST00000188844
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 15 experimentally validated interaction(s) in this database.
They are also associated with 39 interaction(s) predicted by orthology.
Experimentally validated
Total 15 [view]
Protein-Protein 15 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 39 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006869 lipid transport
GO:0008150 biological_process
GO:0008203 cholesterol metabolic process
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0034364 high-density lipoprotein particle
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000115677
View Gene Order
ENSBTAG00000004315
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene 110611
UniGene
RefSeq NM_133808 XM_006529073 XM_006529074 XM_006529075 XM_006529076 XM_006529077
OMIM
CCDS CCDS15189
HPRD
IMGT
MGI ID MGI:99256
MGI Symbol Hdlbp
EMBL
GenPept
RNA Seq Atlas 110611

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca