Version 5.4
Mus musculus Gene: Hoxc9
Summary
InnateDB Gene IDBG-189330.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Hoxc9
Gene Name homeobox C9
Synonyms Hox-3.2
Species Mus musculus
Ensembl Gene ENSMUSG00000036139
Encoded Proteins
IDBP-189332
homeobox C9
IDBP-626204
homeobox C9
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000180806:
This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXC genes located in a cluster on chromosome 12. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 15:102976439-102985099
Strand Forward strand
Band F3
Transcripts
ENSMUST00000001706 ENSMUSP00000001706
ENSMUST00000173306 ENSMUSP00000134197
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 14 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 14 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0043565 sequence-specific DNA binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0009952 anterior/posterior pattern specification
GO:0048704 embryonic skeletal system morphogenesis
GO:0048706 embryonic skeletal system development
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000180806
View Gene Order
ENSBTAG00000005606
Not yet available
Cross-References
SwissProt P09633
TrEMBL
UniProt Splice Variant
Entrez Gene 15427
UniGene Mm.4765
RefSeq NM_008272
OMIM
CCDS CCDS27893
HPRD
IMGT
MGI ID MGI:96199
MGI Symbol Hoxc9
EMBL AK012173 AK078758 BC050838 M35603 X07647 X55318
GenPept AAA37856 AAH50838 BAB28077 BAC37378 CAA30487 CAA39026
RNA Seq Atlas 15427

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca