Version 5.4
Mus musculus Gene: Rrp9
Summary
InnateDB Gene IDBG-196344.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rrp9
Gene Name RRP9, small subunit (SSU) processome component, homolog (yeast)
Synonyms 55kDa; D19435; D9Wsu10e; Rnu3ip2; U3-55k
Species Mus musculus
Ensembl Gene ENSMUSG00000041506
Encoded Proteins
IDBP-196346
RRP9, small subunit (SSU) processome component, homolog (yeast)
IDBP-787666
RRP9, small subunit (SSU) processome component, homolog (yeast)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000114767:
This gene encodes a member of the WD-repeat protein family. The encoded protein is a component of the nucleolar small nuclear ribonucleoprotein particle (snoRNP) and is essential for 18s rRNA processing during ribosome synthesis. It contains seven WD domains required for nucleolar localization and specific interaction with the U3 small nucleolar RNA (U3 snoRNA). [provided by RefSeq, Oct 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 9:106475963-106485424
Strand Forward strand
Band F1
Transcripts
ENSMUST00000047721 ENSMUSP00000038580
ENSMUST00000123464
ENSMUST00000125630
ENSMUST00000127400
ENSMUST00000156796
ENSMUST00000131618
ENSMUST00000185336 ENSMUSP00000140949
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
They are also associated with 12 interaction(s) predicted by orthology.
Experimentally validated
Total 7 [view]
Protein-Protein 7 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 12 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006364 rRNA processing
GO:0008150 biological_process
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0030529 ribonucleoprotein complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000114767
View Gene Order
ENSBTAG00000000670
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.239997
RefSeq NM_145620
OMIM
CCDS CCDS23481
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca