Version 5.4
Mus musculus Gene: Vps13d
Summary
InnateDB Gene IDBG-203160.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Vps13d
Gene Name vacuolar protein sorting 13 D (yeast)
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000020220
Encoded Proteins
IDBP-203162
vacuolar protein sorting 13 D (yeast)
IDBP-203164
vacuolar protein sorting 13 D (yeast)
IDBP-539481
vacuolar protein sorting 13 D (yeast)
IDBP-788349
vacuolar protein sorting 13 D (yeast)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000048707:
This gene encodes a protein belonging to the vacuolar-protein-sorting-13 gene family. In yeast, vacuolar-protein-sorting-13 proteins are involved in trafficking of membrane proteins between the trans-Golgi network and the prevacuolar compartment. While several transcript variants may exist for this gene, the full-length natures of only two have been described to date. These two represent the major variants of this gene and encode distinct isoforms. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 4:144972622-145195005
Strand Reverse strand
Band E1
Transcripts
ENSMUST00000036579 ENSMUSP00000043240
ENSMUST00000020441 ENSMUSP00000020441
ENSMUST00000130704 ENSMUSP00000118699
ENSMUST00000147511
ENSMUST00000141208
ENSMUST00000144835
ENSMUST00000142308
ENSMUST00000155670
ENSMUST00000132700
ENSMUST00000185113 ENSMUSP00000138946
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0008150 biological_process
Cellular Component
GO:0070062 extracellular vesicular exosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000048707
View Gene Order
ENSBTAG00000016080
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene
RefSeq NM_001128198 NM_001276465 NM_001276502 XM_006538804 XM_006538805 XM_006538806
OMIM
CCDS CCDS71517
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca