Version 5.4
Homo sapiens Gene: RTDR1
Summary
InnateDB Gene IDBG-2288.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol RTDR1
Gene Name rhabdoid tumor deletion region gene 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000100218
Encoded Proteins
IDBP-2290
rhabdoid tumor deletion region gene 1
IDBP-292753
rhabdoid tumor deletion region gene 1
IDBP-365760
rhabdoid tumor deletion region gene 1
IDBP-365766
rhabdoid tumor deletion region gene 1
IDBP-365769
rhabdoid tumor deletion region gene 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a protein with no known function but with slight similarity to a yeast vacuolar protein. The gene is located in a region deleted in pediatric rhabdoid tumors of the brain, kidney and soft tissues, but mutations in this gene have not been associated with the disease. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 22:23059415-23145021
Strand Reverse strand
Band q11.23
Transcripts
ENST00000216036 ENSP00000216036
ENST00000406876 ENSP00000385567
ENST00000421213 ENSP00000414155
ENST00000439064 ENSP00000406822
ENST00000452757 ENSP00000391552
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0005488 binding
GO:0005515 protein binding
Biological Process
GO:0008150 biological_process
Cellular Component
GO:0005575 cellular_component
Orthologs
Species
Mus musculus
Gene ID
Gene Order
ENSMUSG00000009070
View Gene Order
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.526920 Hs.594554
RefSeq NM_014433
HUGO
OMIM
CCDS CCDS13803
HPRD 16136
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca