Version 5.4
Homo sapiens Gene: RBMY1J
Summary
InnateDB Gene IDBG-298410.4
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol RBMY1J
Gene Name RNA binding motif protein, Y-linked, family 1, member J
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000226941
Encoded Proteins
IDBP-542
RNA binding motif protein, Y-linked, family 1, member J
IDBP-363090
RNA binding motif protein, Y-linked, family 1, member J
IDBP-363109
RNA binding motif protein, Y-linked, family 1, member J
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. Multiple copies of this gene are found in the AZFb azoospermia factor region of chromosome Y and the encoded protein is thought to be involved in spermatogenesis. Most copies of this locus are pseudogenes, although six highly similar copies have full-length ORFs and are considered functional. Four functional copies of this gene are found within inverted repeat IR2; two functional copies of this gene are found in palindrome P3, along with two copies of PTPN13-like, Y-linked. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome Y:22308823-22417881
Strand Forward strand
Band q11.223
Transcripts
ENST00000250831 ENSP00000250831
ENST00000445779 ENSP00000389621
ENST00000414629 ENSP00000405745
ENST00000470460
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
Experimentally validated
Total 2 [view]
Protein-Protein 1 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
Biological Process
GO:0006397 mRNA processing
GO:0007283 spermatogenesis
GO:0008380 RNA splicing
Cellular Component
GO:0005575 cellular_component
GO:0005634 nucleus
Orthologs
No orthologs found for this gene
Cross-References
SwissProt Q15415
TrEMBL
UniProt Splice Variant
Entrez Gene 378951
UniGene Hs.567746 Hs.632846
RefSeq NM_152585 XM_005262576 XM_005262577 XM_005262589 NM_001006117 XM_005262590
HUGO HGNC:23917
OMIM 400006
CCDS CCDS35484
HPRD 15233
IMGT
EMBL AC007320 AC023342 AK313597 BC030018 BC152392 X76060
GenPept AAH30018 AAI52393 BAG36363 CAA53660
RNA Seq Atlas 159163 378951

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca