Version 5.4
Homo sapiens Gene: PGBD3
Summary
InnateDB Gene IDBG-547256.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PGBD3
Gene Name PiggyBac transposable element-derived protein 3
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000258838
Encoded Proteins
IDBP-375336
PiggyBac transposable element-derived protein 3
IDBP-476437
PiggyBac transposable element-derived protein 3
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene is a member of a small family of genes derived from piggyBac transposable elements. The encoded protein contains a zinc-ribbon domain characteristic of transposon-derived proteins and may function as a regulator of transcription. Naturally-occurring readthrough transcription occurs between this gene and the adjacent ERCC6 gene (GeneID 2074), and results in a fusion protein that shares sequence with the product of each individual gene. The readthrough locus is represented by GeneID:101243544. There are several pseudogenes for this gene on chromosomes 4, 5 and 12. [provided by RefSeq, Mar 2013]
Gene Information
Type Protein coding
Genomic Location Chromosome 10:49515201-49539538
Strand Reverse strand
Band q11.23
Transcripts
ENST00000447839 ENSP00000387966
ENST00000515869 ENSP00000423550
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Orthologs
No orthologs found for this gene
Cross-References
SwissProt
TrEMBL D6R9X7 E7EV46
UniProt Splice Variant
Entrez Gene 267004
UniGene
RefSeq NM_001277058 NM_001277059
HUGO HGNC:48347
OMIM
CCDS CCDS60529
HPRD
IMGT
EMBL AC073366 AK074682 AL138760 BC028954 BC034479 BC063690
GenPept AAH28954 AAH34479 AAH63690 BAG51986 CAH70290
RNA Seq Atlas 101243544 267004

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca