Version 5.4
Homo sapiens Gene: ZNF638
Summary
InnateDB Gene IDBG-55926.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol ZNF638
Gene Name zinc finger protein 638
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000075292
Encoded Proteins
IDBP-55928
zinc finger protein 638
IDBP-295598
zinc finger protein 638
IDBP-811399
zinc finger protein 638
IDBP-379111
zinc finger protein 638
IDBP-379112
zinc finger protein 638
IDBP-379113
zinc finger protein 638
IDBP-379115
zinc finger protein 638
IDBP-379117
zinc finger protein 638
IDBP-811391
zinc finger protein 638
IDBP-811393
zinc finger protein 638
IDBP-811400
zinc finger protein 638
IDBP-811403
zinc finger protein 638
IDBP-811405
zinc finger protein 638
IDBP-811476
zinc finger protein 638
IDBP-811480
zinc finger protein 638
IDBP-755580
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary The protein encoded by this gene is a nucleoplasmic protein. It binds cytidine-rich sequences in double-stranded DNA. This protein has three types of domains: MH1, MH2 (repeated three times) and MH3. It is associated with packaging, transferring, or processing transcripts. Multiple alternatively spliced transcript variants have been found for this gene, but the biological validity of some variants has not been determined. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 2:71276561-71435069
Strand Forward strand
Band p13.3
Transcripts
ENST00000264447 ENSP00000264447
ENST00000409544 ENSP00000386433
ENST00000410075 ENSP00000485608
ENST00000409407
ENST00000454278 ENSP00000402875
ENST00000455226 ENSP00000408557
ENST00000437658 ENSP00000388164
ENST00000454122 ENSP00000409647
ENST00000417778 ENSP00000396909
ENST00000434786
ENST00000494621 ENSP00000485618
ENST00000466975 ENSP00000485154
ENST00000466330 ENSP00000485494
ENST00000464375 ENSP00000485266
ENST00000475743 ENSP00000485169
ENST00000487707
ENST00000486494
ENST00000491843
ENST00000487638
ENST00000494241
ENST00000483421
ENST00000493576 ENSP00000485667
ENST00000461991 ENSP00000485192
ENST00000492262
ENST00000472758
ENST00000488126
ENST00000460310
ENST00000601581 ENSP00000469295
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 35 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 35 [view]
Protein-Protein 34 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003690 double-stranded DNA binding
GO:0003723 RNA binding
GO:0008270 zinc ion binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0016607 nuclear speck
GO:0043231 intracellular membrane-bounded organelle
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000030016
View Gene Order
ENSBTAG00000009242
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.434401 Hs.688019
RefSeq NM_001014972 NM_001252612 NM_001252613 NM_014497 XM_005264261 XM_005264263 XM_005264264 XM_006711989 XM_006711990
HUGO
OMIM
CCDS CCDS1917
HPRD 11736
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca