InnateDB: Systems Biology of the Innate Immune Response

Bos taurus Gene: CRYM

Summary

InnateDB Gene

IDBG-638188.3

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

CRYM

Gene Name

Thiomorpholine-carboxylate dehydrogenase

Synonyms

Species

Bos taurus

Ensembl Gene

ENSBTAG00000009842

Encoded Proteins

IDBP-690243

Mu-crystallin homolog

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000103316:
Crystallins are separated into two classes: taxon-specific and ubiquitous. The former class is also called phylogenetically-restricted crystallins. The latter class constitutes the major proteins of vertebrate eye lens and maintains the transparency and refractive index of the lens. This gene encodes a taxon-specific crystallin protein that binds NADPH and has sequence similarity to bacterial ornithine cyclodeaminases. The encoded protein does not perform a structural role in lens tissue, and instead it binds thyroid hormone for possible regulatory or developmental roles. Mutations in this gene have been associated with autosomal dominant non-syndromic deafness. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Mar 2010]
Crystallins are separated into two classes: taxon-specific and ubiquitous. The former class is also called phylogenetically-restricted crystallins. The latter class constitutes the major proteins of vertebrate eye lens and maintains the transparency and refractive index of the lens. This gene encodes a taxon-specific crystallin protein that binds NADPH and has sequence similarity to bacterial ornithine cyclodeaminases. The encoded protein does not perform a structural role in lens tissue, and instead it binds thyroid hormone for possible regulatory or developmental roles. Mutations in this gene have been associated with autosomal dominant non-syndromic deafness. [provided by RefSeq, Sep 2014]

Gene Information

Type

Protein coding

Genomic Location

Chromosome 25:19283503-19307061

Strand

Reverse strand

Band

Transcripts

ENSBTAT00000012972

ENSBTAP00000012972

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.

Predicted by orthology
Total	4 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0003714	transcription corepressor activity
GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity
GO:0016491	oxidoreductase activity
GO:0042562	hormone binding
GO:0042803	protein homodimerization activity
GO:0047127	thiomorpholine-carboxylate dehydrogenase activity
GO:0050661	NADP binding
GO:0070324	thyroid hormone binding

Biological Process

GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0006098	pentose-phosphate shunt
GO:0007605	sensory perception of sound
GO:0042403	thyroid hormone metabolic process
GO:0055114	oxidation-reduction process
GO:0070327	thyroid hormone transport

Cellular Component

GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005739	mitochondrion
GO:0070062	extracellular vesicular exosome

Orthologs

Species

Homo sapiens

Mus musculus

Gene ID

Gene Order

ENSG00000103316

View Gene Order

ENSMUSG00000030905

View Gene Order

Cross-References

SwissProt

Q2KHX6

TrEMBL

UniProt Splice Variant

Entrez Gene

505167

UniGene

Bt.2913

RefSeq

NM_001045914

HUGO

OMIM

CCDS

HPRD

IMGT

EMBL

BC112846

GenPept

AAI12847

RNA Seq Atlas

505167