Bos taurus Gene: COL1A1
Summary
InnateDB Gene IDBG-638637.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol COL1A1
Gene Name Collagen alpha-1(I) chain
Synonyms
Species Bos taurus
Ensembl Gene ENSBTAG00000013103
Encoded Proteins
Collagen alpha-1(I) chain
Protein Structure
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000108821:
This gene encodes the pro-alpha1 chains of type I collagen whose triple helix comprises two alpha1 chains and one alpha2 chain. Type I is a fibril-forming collagen found in most connective tissues and is abundant in bone, cornea, dermis and tendon. Mutations in this gene are associated with osteogenesis imperfecta types I-IV, Ehlers-Danlos syndrome type VIIA, Ehlers-Danlos syndrome Classical type, Caffey Disease and idiopathic osteoporosis. Reciprocal translocations between chromosomes 17 and 22, where this gene and the gene for platelet-derived growth factor beta are located, are associated with a particular type of skin tumor called dermatofibrosarcoma protuberans, resulting from unregulated expression of the growth factor. Two transcripts, resulting from the use of alternate polyadenylation signals, have been identified for this gene. [provided by R. Dalgleish, Feb 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 19:37088246-37104998
Strand Forward strand
Band
Transcripts
ENSBTAT00000017420 ENSBTAP00000017420
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 34 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 34 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005201 extracellular matrix structural constituent
GO:0005515 protein binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0048407 platelet-derived growth factor binding
Biological Process
GO:0001501 skeletal system development
GO:0001568 blood vessel development
GO:0001649 osteoblast differentiation
GO:0001957 intramembranous ossification
GO:0001958 endochondral ossification
GO:0007601 visual perception
GO:0007605 sensory perception of sound
GO:0010718 positive regulation of epithelial to mesenchymal transition
GO:0010812 negative regulation of cell-substrate adhesion
GO:0015031 protein transport
GO:0030199 collagen fibril organization
GO:0030335 positive regulation of cell migration
GO:0032964 collagen biosynthetic process
GO:0034504 protein localization to nucleus
GO:0034505 tooth mineralization
GO:0043588 skin development
GO:0043589 skin morphogenesis
GO:0045893 positive regulation of transcription, DNA-templated
GO:0048705 skeletal system morphogenesis
GO:0048706 embryonic skeletal system development
GO:0060325 face morphogenesis
GO:0060346 bone trabecula formation
GO:0060351 cartilage development involved in endochondral bone morphogenesis
GO:0070208 protein heterotrimerization
GO:0071230 cellular response to amino acid stimulus
GO:0071260 cellular response to mechanical stimulus
GO:0090263 positive regulation of canonical Wnt signaling pathway
Cellular Component
GO:0005576 extracellular region
GO:0005578 proteinaceous extracellular matrix
GO:0005581 collagen trimer
GO:0005584 collagen type I
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0031012 extracellular matrix
Orthologs
Species
Homo sapiens
Mus musculus
Gene ID
Gene Order
Method
Confidence
Comments
SSD Ortholog
Ortholog supports species divergence
SSD Ortholog
Ortholog supports species divergence
Pathways
NETPATH
REACTOME
Collagen formation pathway
Cell surface interactions at the vascular wall pathway
Non-integrin membrane-ECM interactions pathway
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
Collagen degradation pathway
Hemostasis pathway
Platelet activation, signaling and aggregation pathway
Degradation of the extracellular matrix pathway
Assembly of collagen fibrils and other multimeric structures pathway
Scavenging by Class A Receptors pathway
Anchoring fibril formation pathway
GPVI-mediated activation cascade pathway
Binding and Uptake of Ligands by Scavenger Receptors pathway
Integrin cell surface interactions pathway
Crosslinking of collagen fibrils pathway
Platelet Adhesion to exposed collagen pathway
ECM proteoglycans pathway
Syndecan interactions pathway
KEGG
INOH
PID BIOCARTA
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
Degradation of the extracellular matrix pathway
Syndecan interactions pathway
Platelet activation, signaling and aggregation pathway
Binding and Uptake of Ligands by Scavenger Receptors pathway
Scavenging by Class A Receptors pathway
Platelet Adhesion to exposed collagen pathway
Integrin cell surface interactions pathway
ECM proteoglycans pathway
Non-integrin membrane-ECM interactions pathway
GPVI-mediated activation cascade pathway
Crosslinking of collagen fibrils pathway
Assembly of collagen fibrils and other multimeric structures pathway
Collagen degradation pathway
Collagen formation pathway
Cell surface interactions at the vascular wall pathway
Anchoring fibril formation pathway
Hemostasis pathway
Collagen formation pathway
Assembly of collagen fibrils and other multimeric structures pathway
Syndecan interactions pathway
Hemostasis pathway
Collagen biosynthesis and modifying enzymes pathway
Cell surface interactions at the vascular wall pathway
Anchoring fibril formation pathway
Extracellular matrix organization pathway
Platelet activation, signaling and aggregation pathway
Binding and Uptake of Ligands by Scavenger Receptors pathway
Scavenging by Class A Receptors pathway
Platelet Adhesion to exposed collagen pathway
GPVI-mediated activation cascade pathway
Integrin cell surface interactions pathway
ECM proteoglycans pathway
Non-integrin membrane-ECM interactions pathway
Crosslinking of collagen fibrils pathway
Degradation of the extracellular matrix pathway
Collagen degradation pathway
KEGG
Focal adhesion pathway
ECM-receptor interaction pathway
Protein digestion and absorption pathway
Amoebiasis pathway
Focal adhesion pathway
ECM-receptor interaction pathway
Protein digestion and absorption pathway
Amoebiasis pathway
INOH
Integrin signaling pathway pathway
Integrin signaling pathway pathway
PID BIOCARTA
PID NCI
Beta1 integrin cell surface interactions
VEGFR3 signaling in lymphatic endothelium
IL4-mediated signaling events
Beta3 integrin cell surface interactions
Cross-References
SwissProt P02453
TrEMBL Q95ND8
UniProt Splice Variant
Entrez Gene 282187
UniGene Bt.23316
RefSeq NM_001034039
HUGO
OMIM
CCDS
HPRD
IMGT
EMBL AJ312109 AJ312110 AJ312111 AJ312112 BC105184
GenPept AAI05185 CAC38832
ImmGen COL1A1 (murine)
RNA Seq Atlas 282187
Transcript Frequencies
Tag Count based mRNA-Abundances across 87 different Tissues (TPM).

Based on Data from Bovine Gene Atlas

Tag Count based mRNA-Abundances across 87 different Tissues (TPM)

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