Version 5.4
Homo sapiens Gene: GPANK1
Summary
InnateDB Gene IDBG-78501.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol GPANK1
Gene Name G patch domain and ankyrin repeats 1
Synonyms ANKRD59; BAT4; D6S54E; G5; GPATCH10
Species Homo sapiens
Ensembl Gene ENSG00000204438
Encoded Proteins
IDBP-78503
G patch domain and ankyrin repeats 1
IDBP-78507
G patch domain and ankyrin repeats 1
IDBP-78509
G patch domain and ankyrin repeats 1
IDBP-78511
G patch domain and ankyrin repeats 1
IDBP-78513
G patch domain and ankyrin repeats 1
IDBP-372256
G patch domain and ankyrin repeats 1
IDBP-372260
G patch domain and ankyrin repeats 1
IDBP-372269
G patch domain and ankyrin repeats 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene is located in a cluster of HLA-B-associated transcripts, which is included in the human major histocompatability complex III region. This gene encodes a protein which is thought to play a role in immunity. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Nov 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 6:31661229-31666283
Strand Reverse strand
Band p21.33
Transcripts
ENST00000375906 ENSP00000365071
ENST00000375900 ENSP00000365065
ENST00000375896 ENSP00000365060
ENST00000375895 ENSP00000365059
ENST00000375893 ENSP00000365057
ENST00000458083 ENSP00000395307
ENST00000445768 ENSP00000409349
ENST00000456540 ENSP00000395484
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 10 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 10 [view]
Protein-Protein 9 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0005515 protein binding
Biological Process
Cellular Component
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000092417
View Gene Order
ENSBTAG00000008835
Not yet available
Cross-References
SwissProt
TrEMBL F6QYZ9 F6UZA3
UniProt Splice Variant
Entrez Gene 7918
UniGene Hs.247478
RefSeq NM_001199237 NM_001199238 NM_001199239 NM_001199240 NM_033177 XM_005249403 XM_005275179 XM_005275302 XM_006715204 XM_006725847 XM_006725935
HUGO HGNC:13920
OMIM 142610
CCDS CCDS4711
HPRD 00810
IMGT
EMBL AL662899
GenPept
RNA Seq Atlas 7918

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca