Version 5.4
Homo sapiens Gene: CHODL
Summary
InnateDB Gene IDBG-947.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol CHODL
Gene Name chondrolectin
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000154645
Encoded Proteins
IDBP-949
chondrolectin
IDBP-951
chondrolectin
IDBP-228950
chondrolectin
IDBP-228952
chondrolectin
IDBP-228954
chondrolectin
IDBP-228956
chondrolectin
IDBP-585705
chondrolectin
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a type I membrane protein with a carbohydrate recognition domain characteristic of C-type lectins in its extracellular portion. In other proteins, this domain is involved in endocytosis of glycoproteins and exogenous sugar-bearing pathogens. This protein localizes predominantly to the perinuclear region. Several transcript variants encoding a few different isoforms have been found for this gene. [provided by RefSeq, Feb 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 21:17901263-18267373
Strand Forward strand
Band q21.1
Transcripts
ENST00000299295 ENSP00000299295
ENST00000338326 ENSP00000339975
ENST00000400135 ENSP00000383001
ENST00000400131 ENSP00000382996
ENST00000400128 ENSP00000382993
ENST00000400127 ENSP00000382992
ENST00000543733 ENSP00000443566
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
Experimentally validated
Total 1 [view]
Protein-Protein 0
Protein-DNA 0
Protein-RNA 0
DNA-DNA 1 [view]
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0030246 carbohydrate binding
Biological Process
GO:0007517 muscle organ development
Cellular Component
GO:0005737 cytoplasm
GO:0016021 integral component of membrane
GO:0048471 perinuclear region of cytoplasm
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000022860
View Gene Order
ENSBTAG00000000588
Not yet available
Cross-References
SwissProt Q9H9P2
TrEMBL
UniProt Splice Variant
Entrez Gene 140578
UniGene Hs.283725
RefSeq NM_001204174 NM_001204175 NM_001204176 NM_001204177 NM_001204178 NM_024944
HUGO HGNC:17807
OMIM 607247
CCDS CCDS56208 CCDS13570 CCDS56209 CCDS56210
HPRD 06261
IMGT
EMBL AF130417 AF257472 AF523313 AF523314 AF523315 AK022689 AK296009 AK313725 AL078474 AL109761 AL163217 AP000404 AP000656 AP000745 AP000998 AY358608 BC009418 CH471079
GenPept AAH09418 AAL05981 AAP43902 AAP43903 AAP43904 AAQ88971 BAB14181 BAG36467 BAG58780 CAB90388 EAX10018
RNA Seq Atlas 140578

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca