Version 5.4
Homo sapiens Protein: PRPF38B
Summary
InnateDB Protein IDBP-100690.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PRPF38B
Protein Name PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Synonyms
Species Homo sapiens
Ensembl Protein ENSP00000359042
InnateDB Gene IDBG-100688 (PRPF38B)
Protein Structure
UniProt Annotation
Function May be required for pre-mRNA splicing. {ECO:0000305}.
Subcellular Localization Nucleus {ECO:0000305}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
Experimentally validated
Total 5 [view]
Protein-Protein 4 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005681 spliceosomal complex
Protein Structure and Domains
PDB ID
InterPro IPR005037 Pre-mRNA-splicing factor 38
PFAM PF03371
PRINTS
PIRSF
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q5VTL8
PhosphoSite PhosphoSite-Q5VTL8
TrEMBL
UniProt Splice Variant
Entrez Gene 55119
UniGene Hs.600802
RefSeq NP_060531
HUGO HGNC:25512
OMIM
CCDS CCDS788
HPRD 07664
IMGT
EMBL AK001192 AL160171 AL591719 AY211915 BC007757 BC016296 BC024275 BC040127 BC053838 BC107801 BC130346 BC132963
GenPept AAH07757 AAH16296 AAH24275 AAH40127 AAH53838 AAI07802 AAI30347 AAI32964 AAO65168 BAA91546 CAH72068 CAH72069 CAH72070 CAI12932 CAI12933 CAI12934

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca