InnateDB: Systems Biology of the Innate Immune Response

Homo sapiens Protein: PRPF38B

Summary

InnateDB Protein

IDBP-100694.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

PRPF38B

Protein Name

PRP38 pre-mRNA processing factor 38 (yeast) domain containing B

Synonyms

Species

Homo sapiens

Ensembl Protein

ENSP00000359039

InnateDB Gene

IDBG-100688 (PRPF38B)

Protein Structure

UniProt Annotation

Function

May be required for pre-mRNA splicing. {ECO:0000305}.

Subcellular Localization

Nucleus {ECO:0000305}.

Disease Associations

Tissue Specificity

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.

Experimentally validated
Total	5 [view]
Protein-Protein	4 [view]
Protein-DNA	1 [view]
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Gene Ontology

Molecular Function

Accession	GO Term
GO:0044822	poly(A) RNA binding

Biological Process

GO:0006397	mRNA processing
GO:0008380	RNA splicing

Cellular Component

GO:0005681

spliceosomal complex

Protein Structure and Domains

PDB ID

InterPro

IPR005037 Pre-mRNA-splicing factor 38

PFAM

PF03371

PRINTS

PIRSF

SMART

TIGRFAMs

Post-translational Modifications

Modification

Cross-References

SwissProt

Q5VTL8

PhosphoSite

PhosphoSite-Q5VTL8

TrEMBL

UniProt Splice Variant

Entrez Gene

55119

UniGene

Hs.600802

RefSeq

HUGO

HGNC:25512

OMIM

CCDS

HPRD

07664

IMGT

EMBL

AK001192 AL160171 AL591719 AY211915 BC007757 BC016296 BC024275 BC040127 BC053838 BC107801 BC130346 BC132963

GenPept

AAH07757 AAH16296 AAH24275 AAH40127 AAH53838 AAI07802 AAI30347 AAI32964 AAO65168 BAA91546 CAH72068 CAH72069 CAH72070 CAI12932 CAI12933 CAI12934