Version 5.4
Mus musculus Protein: Hist1h1d
Summary
InnateDB Protein IDBP-136240.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Hist1h1d
Protein Name histone cluster 1, H1d
Synonyms H1.3; H1D; H1f3; H1s-4;
Species Mus musculus
Ensembl Protein ENSMUSP00000044395
InnateDB Gene IDBG-136238 (Hist1h1d)
Protein Structure
UniProt Annotation
Function Histone H1 protein binds to linker DNA between nucleosomes forming the macromolecular structure known as the chromatin fiber. Histones H1 are necessary for the condensation of nucleosome chains into higher-order structured fibers. Acts also as a regulator of individual gene transcription through chromatin remodeling, nucleosome spacing and DNA methylation (By similarity). {ECO:0000250}.
Subcellular Localization Nucleus. Chromosome. Note=Mainly localizes in euchromatin. {ECO:0000250}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
Experimentally validated
Total 7 [view]
Protein-Protein 7 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0031490 chromatin DNA binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006334 nucleosome assembly
GO:0016584 nucleosome positioning
Cellular Component
GO:0000786 nucleosome
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005719 nuclear euchromatin
Protein Structure and Domains
PDB ID MGI:107502
InterPro IPR005818 Linker histone H1/H5, domain H15
IPR005819 Histone H5
PFAM PF00538
PRINTS PR00624
PIRSF
SMART SM00526
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt P43277
PhosphoSite PhosphoSite-P43277
TrEMBL Q149Z9
UniProt Splice Variant
Entrez Gene 14957
UniGene Mm.247046
RefSeq NP_663759
MGI ID
MGI Symbol Hist1h1d
OMIM
CCDS CCDS26346
HPRD
IMGT
EMBL AK054269 AY158906 BC117045 BC119173 CH466561 U62923 Z38128
GenPept AAB05799 AAI17046 AAI19174 AAO06217 BAC35711 CAA86288 EDL32557

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca