InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Protein: Batf

Summary

InnateDB Protein

IDBP-158626.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Batf

Protein Name

basic leucine zipper transcription factor, ATF-like

Synonyms

B-ATF; SFA-2;

Species

Mus musculus

Ensembl Protein

ENSMUSP00000040706

InnateDB Gene

IDBG-158624 (Batf)

Protein Structure

UniProt Annotation

Function

AP-1 family transcription factor that controls the differentiation of lineage-specific cells in the immune system: specifically mediates the differentiation of T-helper 17 cells (Th17), follicular T-helper cells (TfH), CD8(+) dendritic cells and class-switch recombination (CSR) in B-cells. Acts via the formation of a heterodimer with JUNB that recognizes and binds DNA sequence 5'-TGA[CG]TCA-3'. The BATF-JUNB heterodimer also forms a complex with IRF4 (or IRF8) in immune cells, leading to recognition of AICE sequence (5'-TGAnTCA/GAAA-3'), an immune- specific regulatory element, followed by cooperative binding of BATF and IRF4 (or IRF8) and activation of genes. Controls differentiation of T-helper cells producing interleukin-17 (Th17 cells) by binding to Th17-associated gene promoters: regulates expression of the transcription factor RORC itself and RORC target genes such as IL17 (IL17A or IL17B). Also involved in differentiation of follicular T-helper cells (TfH) by directing expression of BCL6 and MAF. In B-cells, involved in class-switch recombination (CSR) by controlling the expression of both AICDA and of germline transcripts of the intervening heavy-chain region and constant heavy-chain region (I(H)-C(H)). Following infection, can participate in CD8(+) dendritic cell differentiation via interaction with IRF4 and IRF8 to mediate cooperative gene activation. Regulates effector CD8(+) T-cell differentiation by regulating expression of SIRT1. Following DNA damage, part of a differentiation checkpoint that limits self-renewal of hematopoietic stem cells (HSCs): up-regulated by STAT3, leading to differentiation of HSCs, thereby restricting self-renewal of HSCs. {ECO:0000269PubMed:11466704, ECO:0000269PubMed:12594265, ECO:0000269PubMed:19578362, ECO:0000269PubMed:20421391, ECO:0000269PubMed:21572431, ECO:0000269PubMed:22001828, ECO:0000269PubMed:22385964, ECO:0000269PubMed:22983707, ECO:0000269PubMed:22992523, ECO:0000269PubMed:22992524, ECO:0000269PubMed:23021777}.

Subcellular Localization

Nucleus. Cytoplasm. Note=Present in the nucleus and cytoplasm, but shows increased nuclear translocation after activation of T-cells.

Disease Associations

Tissue Specificity

Detected in postnatal and adult lymphoid tissues such as thymus, spleen and lymph nodes. In thymus most concentrated expression is found in the immediate cortical layer. Differentially expressed during T-cell development in thymus. Highly expressed in Th17, Th1 and Th2 cells and in activated B- cells. {ECO:0000269PubMed:11466704, ECO:0000269PubMed:19578362, ECO:0000269PubMed:20421391}.

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 26 experimentally validated interaction(s) in this database.
They are also associated with 19 interaction(s) predicted by orthology.

Experimentally validated
Total	26 [view]
Protein-Protein	2 [view]
Protein-DNA	24 [view]
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	19 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0003677	DNA binding
GO:0003700	sequence-specific DNA binding transcription factor activity
GO:0005515	protein binding
GO:0043565	sequence-specific DNA binding

Biological Process

GO:0001816	cytokine production
GO:0002320	lymphoid progenitor cell differentiation
GO:0006351	transcription, DNA-templated
GO:0006355	regulation of transcription, DNA-templated
GO:0006974	cellular response to DNA damage stimulus
GO:0030330	DNA damage response, signal transduction by p53 class mediator
GO:0042832	defense response to protozoan
GO:0043011	myeloid dendritic cell differentiation
GO:0045064	T-helper 2 cell differentiation
GO:0045190	isotype switching
GO:0060218	hematopoietic stem cell differentiation
GO:0072539	T-helper 17 cell differentiation
GO:0072540	T-helper 17 cell lineage commitment