InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Protein: Trub1

Summary

InnateDB Protein

IDBP-179913.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Trub1

Protein Name

TruB pseudouridine (psi) synthase homolog 1 (E. coli)

Synonyms

2610009I02Rik; 9030425C13Rik; AI448235; BB118943; C76870;

Species

Mus musculus

Ensembl Protein

ENSMUSP00000026072

InnateDB Gene

IDBG-179909 (Trub1)

Protein Structure

UniProt Annotation

Function

May be responsible for synthesis of pseudouridine from uracil in transfer RNAs. {ECO:0000250}.

Subcellular Localization

Disease Associations

Tissue Specificity

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 5 interaction(s) predicted by orthology.

Predicted by orthology
Total	5 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0003723	RNA binding
GO:0009982	pseudouridine synthase activity

Biological Process

GO:0001522	pseudouridine synthesis
GO:0006396	RNA processing
GO:0008033	tRNA processing
GO:0009451	RNA modification

Cellular Component

GO:0005575

cellular_component

Protein Structure and Domains

PDB ID

MGI:1919383

InterPro

IPR002501 Pseudouridine synthase II
IPR020103 Pseudouridine synthase, catalytic domain

PFAM

PF01509

PRINTS

PIRSF

SMART

TIGRFAMs

Post-translational Modifications

Modification

Cross-References

SwissProt

Q8C0D0

PhosphoSite

PhosphoSite-Q8C0D0

TrEMBL

UniProt Splice Variant

Entrez Gene

72133

UniGene

Mm.410610

RefSeq

NP_084115

MGI ID

MGI Symbol

Trub1

OMIM

CCDS

CCDS29927

HPRD

IMGT

EMBL

AK018525 AK031674 AK169221 BC089592

GenPept

AAH89592 BAB31254 BAC27506 BAE40991