InnateDB Protein
|
IDBP-180857.6
|
Last Modified
|
2014-10-13 [Report errors or provide feedback]
|
Gene Symbol
|
Csde1
|
Protein Name
|
cold shock domain containing E1, RNA binding
|
Synonyms
|
|
Species
|
Mus musculus
|
Ensembl Protein
|
ENSMUSP00000029446
|
InnateDB Gene
|
IDBG-180853 (Csde1)
|
Protein Structure
|
|
Function |
RNA-binding protein. May be involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain (By similarity). {ECO:0000250}.
|
Subcellular Localization |
Cytoplasm {ECO:0000250}.
|
Disease Associations |
|
Tissue Specificity |
|
Comments |
|
Number of Interactions
|
This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
They are also associated with 16 interaction(s) predicted by orthology.
Experimentally validated |
Total |
7
[view]
|
Protein-Protein |
7
[view]
|
Protein-DNA |
0
|
Protein-RNA |
0
|
DNA-DNA |
0
|
RNA-RNA |
0
|
DNA-RNA |
0
|
|
Predicted by orthology |
Total |
16 [view]
|
|
|
Molecular Function |
|
Biological Process |
GO:0006355
|
regulation of transcription, DNA-templated
|
GO:0070966
|
nuclear-transcribed mRNA catabolic process, no-go decay
|
|
Cellular Component |
|
PDB ID |
MGI:92356
|
InterPro |
IPR002059
Cold-shock protein, DNA-binding
IPR011129
Cold shock protein
IPR012340
Nucleic acid-binding, OB-fold
|
PFAM |
PF00313
|
PRINTS |
PR00050
|
PIRSF |
|
SMART |
SM00357
|
TIGRFAMs |
|
Modification |
|
SwissProt |
Q91W50
|
PhosphoSite |
PhosphoSite-Q91W50
|
TrEMBL |
Q3U672
|
UniProt Splice Variant |
|
Entrez Gene |
229663
|
UniGene |
Mm.470121
|
RefSeq |
NP_659150
|
MGI ID |
|
MGI Symbol |
Csde1
|
OMIM |
|
CCDS |
CCDS38569
|
HPRD |
|
IMGT |
|
EMBL |
AK146706
AK152777
AK153263
AK155751
BC016898
BC029058
BC062097
|
GenPept |
AAH16898
AAH29058
AAH62097
BAE27372
BAE31489
BAE31853
BAE33417
|
|
|