Version 5.4
Mus musculus Protein: Prpf38b
Summary
InnateDB Protein IDBP-188123.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Prpf38b
Protein Name PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Synonyms 1110021E09Rik; AU018955;
Species Mus musculus
Ensembl Protein ENSMUSP00000029480
InnateDB Gene IDBG-188121 (Prpf38b)
Protein Structure
UniProt Annotation
Function May be required for pre-mRNA splicing. {ECO:0000305}.
Subcellular Localization Nucleus {ECO:0000305}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 5 interaction(s) predicted by orthology.
Predicted by orthology
Total 5 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006397 mRNA processing
GO:0008150 biological_process
GO:0008380 RNA splicing
Cellular Component
GO:0005575 cellular_component
GO:0005681 spliceosomal complex
Protein Structure and Domains
PDB ID MGI:1914171
InterPro IPR005037 Pre-mRNA-splicing factor 38
PFAM PF03371
PRINTS
PIRSF
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q80SY5
PhosphoSite PhosphoSite-Q80SY5
TrEMBL
UniProt Splice Variant
Entrez Gene 66921
UniGene Mm.470625
RefSeq NP_080121
MGI ID
MGI Symbol Prpf38b
OMIM
CCDS CCDS17770
HPRD
IMGT
EMBL AK003895 AK015938 AK018126 AL671894 BC050900 BC052077
GenPept AAH50900 AAH52077 BAB23062 BAB30042 BAB31082 CAM20607

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca