InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Protein: Snrnp200

Summary

InnateDB Protein

IDBP-204642.5

Last Modified

2012-02-14 [Report errors or provide feedback]

Gene Symbol

Snrnp200

Protein Name

small nuclear ribonucleoprotein 200 (U5)

Synonyms

Species

Mus musculus

Ensembl Protein

ENSMUSP00000099509

InnateDB Gene

IDBG-204640 (Snrnp200)

Protein Structure

UniProt Annotation

Function

Subcellular Localization

Disease Associations

Tissue Specificity

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 100 interaction(s) predicted by orthology.

Experimentally validated
Total	1 [view]
Protein-Protein	1 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	100 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0003676	nucleic acid binding
GO:0003677	DNA binding
GO:0004004	ATP-dependent RNA helicase activity
GO:0004386	helicase activity
GO:0005515	protein binding
GO:0005524	ATP binding
GO:0008026	ATP-dependent helicase activity
GO:0016787	hydrolase activity
GO:0042802	identical protein binding
GO:0044822	poly(A) RNA binding

Biological Process

GO:0001649	osteoblast differentiation
GO:0006200	ATP catabolic process
GO:0006397	mRNA processing
GO:0008380	RNA splicing

Cellular Component

GO:0005634	nucleus
GO:0005681	spliceosomal complex
GO:0005682	U5 snRNP
GO:0016020	membrane
GO:0071013	catalytic step 2 spliceosome

Protein Structure and Domains

PDB ID

MGI:2444401

InterPro

IPR001650 Helicase, C-terminal
IPR004179 Sec63 domain
IPR006935 Helicase/UvrB domain
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase

PFAM

PF00271
PF02889
PF04851
PF00270

PRINTS

PIRSF

SMART

SM00490
SM00611
SM00973
SM00487

TIGRFAMs

Post-translational Modifications

Modification

Cross-References

SwissProt

Q6P4T2