Version 5.4
Mus musculus Protein: Crnkl1
Summary
InnateDB Protein IDBP-208719.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Crnkl1
Protein Name Crn, crooked neck-like 1 (Drosophila)
Synonyms 1200013P10Rik; 5730590A01Rik; C80326; crn;
Species Mus musculus
Ensembl Protein ENSMUSP00000001818
InnateDB Gene IDBG-208715 (Crnkl1)
Protein Structure
UniProt Annotation
Function Involved in pre-mRNA splicing process. {ECO:0000250}.
Subcellular Localization Nucleus speckle {ECO:0000250}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
They are also associated with 13 interaction(s) predicted by orthology.
Experimentally validated
Total 4 [view]
Protein-Protein 4 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 13 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000245 spliceosomal complex assembly
GO:0000398 mRNA splicing, via spliceosome
GO:0006396 RNA processing
GO:0006397 mRNA processing
Cellular Component
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0016607 nuclear speck
Protein Structure and Domains
PDB ID MGI:1914127
InterPro IPR003107 RNA-processing protein, HAT helix
IPR008847 Suppressor of forked
IPR013026 Tetratricopeptide repeat-containing domain
PFAM PF02184
PF05843
PRINTS
PIRSF
SMART SM00386
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt P63154
PhosphoSite PhosphoSite-P63154
TrEMBL
UniProt Splice Variant
Entrez Gene 66877
UniGene Mm.415180
RefSeq NP_080096
MGI ID
MGI Symbol Crnkl1
OMIM
CCDS CCDS16828
HPRD
IMGT
EMBL AK004749 AK012962 AK088882 BC029187
GenPept AAH29187 BAB23530 BAB28572 BAC40630

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca