Version 5.4
Homo sapiens Protein: LSMD1
Summary
InnateDB Protein IDBP-26978.7
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol LSMD1
Protein Name LSM domain containing 1
Synonyms
Species Homo sapiens
Ensembl Protein ENSP00000332103
InnateDB Gene IDBG-26974 (LSMD1)
Protein Structure
UniProt Annotation
Function Auxillary component of the N-terminal acetyltransferase C (NatC) complex which catalyzes acetylation of N-terminal methionine residues. {ECO:0000269PubMed:19398576}.
Subcellular Localization Cytoplasm {ECO:0000269PubMed:19398576}. Nucleus {ECO:0000269PubMed:19398576}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
Experimentally validated
Total 5 [view]
Protein-Protein 4 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
GO:0043066 negative regulation of apoptotic process
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005844 polysome
GO:0031417 NatC complex
Protein Structure and Domains
PDB ID
InterPro IPR001163 Ribonucleoprotein LSM domain
IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 Like-Sm (LSM) domain
PFAM PF01423
PRINTS
PIRSF
SMART SM00651
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q9BRA0
PhosphoSite PhosphoSite-Q9BRA0
TrEMBL
UniProt Splice Variant
Entrez Gene 84316
UniGene Hs.565094
RefSeq NP_115732
HUGO HGNC:28212
OMIM
CCDS CCDS11122
HPRD 17491
IMGT
EMBL AF530060 BC006407 BC033861 BC051846 BC059944
GenPept AAH06407 AAH33861 AAH51846 AAH59944 AAQ09944

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca