Homo sapiens Protein: UPF1 | |||||||||||||||||||||||
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Summary | |||||||||||||||||||||||
InnateDB Protein | IDBP-38887.6 | ||||||||||||||||||||||
Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||||||||||||||||||
Gene Symbol | UPF1 | ||||||||||||||||||||||
Protein Name | UPF1 regulator of nonsense transcripts homolog (yeast) | ||||||||||||||||||||||
Synonyms | HUPF1; NORF1; pNORF1; RENT1; smg-2; | ||||||||||||||||||||||
Species | Homo sapiens | ||||||||||||||||||||||
Ensembl Protein | ENSP00000262803 | ||||||||||||||||||||||
InnateDB Gene | IDBG-38885 (UPF1) | ||||||||||||||||||||||
Protein Structure | |||||||||||||||||||||||
UniProt Annotation | |||||||||||||||||||||||
Function | RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. Recruited by release factors to stalled ribosomes together with the SMG1C protein kinase complex to form the transient SURF (SMG1-UPF1-eRF1- eRF3) complex. In EJC-dependent NMD, the SURF complex associates with the exon junction complex (EJC) (located 50-55 or more nucleotides downstream from the termination codon) through UPF2 and allows the formation of an UPF1-UPF2-UPF3 surveillance complex which is believed to activate NMD. Phosphorylated UPF1 is recognized by EST1B/SMG5, SMG6 and SMG7 which are thought to provide a link to the mRNA degradation machinery involving exonucleolytic and endonucleolytic pathways, and to serve as adapters to protein phosphatase 2A (PP2A), thereby triggering UPF1 dephosphorylation and allowing the recycling of NMD factors. UPF1 can also activate NMD without UPF2 or UPF3, and in the absence of the NMD-enhancing downstream EJC indicative for alternative NMD pathways. Plays a role in replication-dependent histone mRNA degradation at the end of phase S; the function is independent of UPF2. For the recognition of premature termination codons (PTC) and initiation of NMD a competitive interaction between UPF1 and PABPC1 with the ribosome-bound release factors is proposed. The ATPase activity of UPF1 is required for disassembly of mRNPs undergoing NMD. Essential for embryonic viability. {ECO:0000269PubMed:11163187, ECO:0000269PubMed:16086026, ECO:0000269PubMed:18172165, ECO:0000269PubMed:21145460, ECO:0000269PubMed:21419344}. | ||||||||||||||||||||||
Subcellular Localization | Cytoplasm. Cytoplasm, P-body. Nucleus. Note=Hyperphosphorylated form is targeted to the P-body, while unphosphorylated protein is distributed throughout the cytoplasm. | ||||||||||||||||||||||
Disease Associations | |||||||||||||||||||||||
Tissue Specificity | Ubiquitous. | ||||||||||||||||||||||
Comments | |||||||||||||||||||||||
Interactions | |||||||||||||||||||||||
Number of Interactions |
This gene and/or its encoded proteins are associated with 155 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
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Gene Ontology | |||||||||||||||||||||||
Molecular Function |
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Biological Process |
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Cellular Component |
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Protein Structure and Domains | |||||||||||||||||||||||
PDB ID | |||||||||||||||||||||||
InterPro |
IPR006935
Helicase/UvrB domain IPR018999 RNA helicase UPF1, UPF2-interacting domain IPR027417 P-loop containing nucleoside triphosphate hydrolase |
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PFAM |
PF04851
PF09416 |
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PRINTS | |||||||||||||||||||||||
PIRSF | |||||||||||||||||||||||
SMART | |||||||||||||||||||||||
TIGRFAMs | |||||||||||||||||||||||
Post-translational Modifications | |||||||||||||||||||||||
Modification | |||||||||||||||||||||||
Cross-References | |||||||||||||||||||||||
SwissProt | Q92900 | ||||||||||||||||||||||
PhosphoSite | PhosphoSite-Q92900 | ||||||||||||||||||||||
TrEMBL | B3KY55 | ||||||||||||||||||||||
UniProt Splice Variant | |||||||||||||||||||||||
Entrez Gene | 5976 | ||||||||||||||||||||||
UniGene | Hs.707440 | ||||||||||||||||||||||
RefSeq | NP_002902 | ||||||||||||||||||||||
HUGO | HGNC:9962 | ||||||||||||||||||||||
OMIM | 601430 | ||||||||||||||||||||||
CCDS | CCDS12386 | ||||||||||||||||||||||
HPRD | 03254 | ||||||||||||||||||||||
IMGT | |||||||||||||||||||||||
EMBL | AC003972 AF074016 AK128727 BC039817 CH471106 D86988 U59323 U65533 | ||||||||||||||||||||||
GenPept | AAB94785 AAC26788 AAC50771 AAC51140 AAH39817 BAA19664 BAG54717 EAW84739 EAW84740 EAW84742 | ||||||||||||||||||||||