Version 5.4
Mus musculus Protein: Vim
Summary
InnateDB Protein IDBP-535135.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Vim
Protein Name vimentin
Synonyms
Species Mus musculus
Ensembl Protein ENSMUSP00000114742
InnateDB Gene IDBG-137864 (Vim)
Protein Structure
UniProt Annotation
Function
Subcellular Localization
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 52 experimentally validated interaction(s) in this database.
They are also associated with 189 interaction(s) predicted by orthology.
Experimentally validated
Total 52 [view]
Protein-Protein 47 [view]
Protein-DNA 5 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 189 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003725 double-stranded RNA binding
GO:0005198 structural molecule activity
GO:0005200 structural constituent of cytoskeleton
GO:0005212 structural constituent of eye lens
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0042802 identical protein binding
GO:0097110 scaffold protein binding
Biological Process
GO:0010977 negative regulation of neuron projection development
GO:0014002 astrocyte development
GO:0045103 intermediate filament-based process
GO:0045109 intermediate filament organization
GO:0060020 Bergmann glial cell differentiation
GO:0070307 lens fiber cell development
Cellular Component
GO:0005737 cytoplasm
GO:0005777 peroxisome
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005882 intermediate filament
GO:0005886 plasma membrane
GO:0031252 cell leading edge
GO:0042995 cell projection
GO:0043005 neuron projection
GO:0045098 type III intermediate filament
GO:0070062 extracellular vesicular exosome
Protein Structure and Domains
PDB ID MGI:98932
InterPro IPR006821 Intermediate filament head, DNA-binding domain
PFAM PF04732
PRINTS
PIRSF
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt
PhosphoSite PhosphoSite-
TrEMBL A2AKJ2
UniProt Splice Variant
Entrez Gene 22352
UniGene Mm.402398
RefSeq
MGI ID
MGI Symbol Vim
OMIM
CCDS
HPRD
IMGT
EMBL AL772303
GenPept

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca