Version 5.4
Homo sapiens Protein: SNRNP48
Summary
InnateDB Protein IDBP-59974.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SNRNP48
Protein Name small nuclear ribonucleoprotein 48kDa (U11/U12)
Synonyms
Species Homo sapiens
Ensembl Protein ENSP00000339834
InnateDB Gene IDBG-59972 (SNRNP48)
Protein Structure
UniProt Annotation
Function Likely involved in U12-type 5' splice site recognition. {ECO:0000269PubMed:19217400}.
Subcellular Localization Nucleus {ECO:0000269PubMed:15146077}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
Experimentally validated
Total 4 [view]
Protein-Protein 4 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0046872 metal ion binding
Biological Process
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005689 U12-type spliceosomal complex
Protein Structure and Domains
PDB ID
InterPro IPR022776 TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain
PFAM PF05253
PRINTS
PIRSF
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q6IEG0
PhosphoSite PhosphoSite-Q6IEG0
TrEMBL
UniProt Splice Variant
Entrez Gene 154007
UniGene Hs.13366
RefSeq NP_689764
HUGO HGNC:21368
OMIM
CCDS CCDS4502
HPRD 12858
IMGT
EMBL AK056796 AK292409 AL031058 AL390026 AL832462 BC114630 BC114631 BK005199 CH471087
GenPept AAI14631 AAI14632 BAB71287 BAF85098 CAI20238 CAI21647 DAA05497 EAW55216

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca