Version 5.4
Bos taurus Protein: SMARCD2
Summary
InnateDB Protein IDBP-694141.2
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SMARCD2
Protein Name SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
Synonyms BAF60B;
Species Bos taurus
Ensembl Protein ENSBTAP00000028049
InnateDB Gene IDBG-641710 (SMARCD2)
Protein Structure
UniProt Annotation
Function Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). {ECO:0000250}.
Subcellular Localization Nucleus {ECO:0000250}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 32 interaction(s) predicted by orthology.
Predicted by orthology
Total 32 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005515 protein binding
GO:0031492 nucleosomal DNA binding
Biological Process
GO:0006337 nucleosome disassembly
GO:0006338 chromatin remodeling
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0016568 chromatin modification
GO:0043044 ATP-dependent chromatin remodeling
Cellular Component
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0016514 SWI/SNF complex
GO:0043234 protein complex
Protein Structure and Domains
PDB ID
InterPro IPR003121 SWIB/MDM2 domain
IPR019835 SWIB domain
PFAM PF02201
PRINTS
PIRSF
SMART SM00151
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt E1BJD1
PhosphoSite PhosphoSite-
TrEMBL
UniProt Splice Variant
Entrez Gene 789613
UniGene Bt.1380
RefSeq NP_001192391
HUGO
OMIM
CCDS
HPRD
IMGT
EMBL AAFC03085035
GenPept

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca