Homo sapiens Protein: NCBP1
Summary
InnateDB Protein IDBP-77868.5
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol NCBP1
Protein Name nuclear cap binding protein subunit 1, 80kDa
Synonyms CBP80; NCBP; Sto1;
Species Homo sapiens
Ensembl Protein ENSP00000364272
InnateDB Gene IDBG-77860 (NCBP1)
Protein Structure
UniProt Annotation
Function Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense-mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus via its interaction with ALYREF/THOC4/ALY, leading to the recruitment of the mRNA export machinery to the 5'-end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U snRNA and intronless mRNAs export from the nucleus. The CBC complex is essential for a pioneer round of mRNA translation, before steady state translation when the CBC complex is replaced by cytoplasmic cap-binding protein eIF4E. The pioneer round of mRNA translation mediated by the CBC complex plays a central role in nonsense-mediated mRNA decay (NMD), NMD only taking place in mRNAs bound to the CBC complex, but not on eIF4E-bound mRNAs. The CBC complex enhances NMD in mRNAs containing at least one exon-junction complex (EJC) via its interaction with UPF1, promoting the interaction between UPF1 and UPF2. The CBC complex is also involved in 'failsafe' NMD, which is independent of the EJC complex, while it does not participate in Staufen-mediated mRNA decay (SMD). During cell proliferation, the CBC complex is also involved in microRNAs (miRNAs) biogenesis via its interaction with SRRT/ARS2 and is required for miRNA-mediated RNA interference. The CBC complex also acts as a negative regulator of PARN, thereby acting as an inhibitor of mRNA deadenylation. In the CBC complex, NCBP1/CBP80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of NCBP2/CBP20 and lock the CBC into a high affinity cap-binding state with the cap structure. {ECO:0000269PubMed:11551508, ECO:0000269PubMed:12093754, ECO:0000269PubMed:15059963, ECO:0000269PubMed:15361857, ECO:0000269PubMed:16186820, ECO:0000269PubMed:16317009, ECO:0000269PubMed:17190602, ECO:0000269PubMed:17873884, ECO:0000269PubMed:18369367, ECO:0000269PubMed:19632182, ECO:0000269PubMed:19648179, ECO:0000269PubMed:7651522, ECO:0000269PubMed:8069914}.
Subcellular Localization Nucleus. Cytoplasm. Note=Localized in cytoplasmic mRNP granules containing untranslated mRNAs.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 96 experimentally validated interaction(s) in this database.
Experimentally validated
Total 96 [view]
Protein-Protein 93 [view]
Protein-DNA 3 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0005488 binding
Biological Process
GO:0016070 RNA metabolic process
Cellular Component
Protein Structure and Domains
PDB ID
InterPro IPR015174 MIF4G-like, type 2
IPR016024 Armadillo-type fold
PFAM PF09090
PRINTS
PIRSF
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt
PhosphoSite PhosphoSite-Q09161
TrEMBL
UniProt Splice Variant
Entrez Gene 4686
UniGene Hs.686479
RefSeq
HUGO HGNC:7658
OMIM 600469
CCDS
HPRD 02717
IMGT
EMBL
GenPept