Version 5.4
Mus musculus Gene: Tdp2
Summary
InnateDB Gene IDBG-139097.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Tdp2
Gene Name tyrosyl-DNA phosphodiesterase 2
Synonyms D13Ertd656e; Ttrap;
Species Mus musculus
Ensembl Gene ENSMUSG00000035958
Encoded Proteins
IDBP-139099
tyrosyl-DNA phosphodiesterase 2
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000111802:
This gene encodes a member of a superfamily of divalent cation-dependent phosphodiesterases. The encoded protein associates with CD40, tumor necrosis factor (TNF) receptor-75 and TNF receptor associated factors (TRAFs), and inhibits nuclear factor-kappa-B activation. This protein has sequence and structural similarities with APE1 endonuclease, which is involved in both DNA repair and the activation of transcription factors. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 13:24831679-24842153
Strand Forward strand
Band A3.1
Transcripts
ENSMUST00000038039 ENSMUSP00000035660
ENSMUST00000130788
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 31 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 31 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000287 magnesium ion binding
GO:0003697 single-stranded DNA binding
GO:0004519 endonuclease activity
GO:0005515 protein binding
GO:0008081 phosphoric diester hydrolase activity
GO:0030145 manganese ion binding
GO:0036317 tyrosyl-RNA phosphodiesterase activity
GO:0070260 5'-tyrosyl-DNA phosphodiesterase activity
Biological Process
GO:0006302 double-strand break repair
GO:0090305 nucleic acid phosphodiester bond hydrolysis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0016605 PML body
GO:0045171 intercellular bridge
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
ENSG00000111802
View Gene Order
Ortholuge
SSD Ortholog
Ortholog supports species divergence
ENSBTAG00000000365
Not yet available
Ortholuge
SSD Ortholog
Ortholog supports species divergence
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
KEGG
INOH
PID BIOCARTA
PID NCI
cd40_pathway
CD40/CD40L signaling
Cross-References
SwissProt Q9JJX7
TrEMBL
UniProt Splice Variant
Entrez Gene 56196
UniGene Mm.473059
RefSeq NM_019551
OMIM
CCDS CCDS26381
HPRD
IMGT
MGI ID MGI:1860486
MGI Symbol Tdp2
EMBL AJ251328 AL589699 BC132511 BC132513 CH466561
GenPept AAI32512 AAI32514 CAB92971 CAI26084 EDL32475
RNA Seq Atlas 56196

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca