Version 5.4
Homo sapiens Gene: IFFO1
Summary
InnateDB Gene IDBG-14327.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol IFFO1
Gene Name intermediate filament family orphan 1
Synonyms HOM-TES-103; IFFO
Species Homo sapiens
Ensembl Gene ENSG00000010295
Encoded Proteins
IDBP-14329
intermediate filament family orphan 1
IDBP-14331
intermediate filament family orphan 1
IDBP-236632
intermediate filament family orphan 1
IDBP-363842
intermediate filament family orphan 1
IDBP-599601
intermediate filament family orphan 1
IDBP-584006
intermediate filament family orphan 1
IDBP-813397
intermediate filament family orphan 1
IDBP-813398
intermediate filament family orphan 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene is a member of the intermediate filament family. Intermediate filaments are proteins which are primordial components of the cytoskeleton and nuclear envelope. The proteins encoded by the members of this gene family are evolutionarily and structurally related but have limited sequence homology, with the exception of the central rod domain. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 12:6538375-6556083
Strand Reverse strand
Band p13.31
Transcripts
ENST00000356896 ENSP00000349364
ENST00000336604 ENSP00000337593
ENST00000396840 ENSP00000380052
ENST00000396830
ENST00000436152 ENSP00000390721
ENST00000465801 ENSP00000436261
ENST00000471408
ENST00000472558
ENST00000487279 ENSP00000432493
ENST00000488007
ENST00000619571 ENSP00000482285
ENST00000615885 ENSP00000482340
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 8 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 8 [view]
Protein-Protein 8 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005198 structural molecule activity
Biological Process
Cellular Component
GO:0005882 intermediate filament
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000038271
View Gene Order
ENSBTAG00000030369
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.15243 Hs.628927
RefSeq NM_001039670 NM_001193457 NM_080730 XM_006718973 XM_006718974 XM_006718975 XM_006718976 XM_006718977 XM_006718978 XM_006718980 XM_006718981 XM_006718982
HUGO
OMIM
CCDS CCDS41741 CCDS73425 CCDS8550
HPRD 09988
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca