Version 5.4
Mus musculus Gene: Carf
Summary
InnateDB Gene IDBG-158932.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Carf
Gene Name calcium response factor
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000026017
Encoded Proteins
IDBP-158934
calcium response factor
IDBP-715415
IDBP-540662
calcium response factor
IDBP-789890
calcium response factor
IDBP-714441
IDBP-789888
calcium response factor
IDBP-789889
calcium response factor
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000138380:
Gene Information
Type Protein coding
Genomic Location Chromosome 1:60098247-60153953
Strand Forward strand
Band C2
Transcripts
ENSMUST00000027171 ENSMUSP00000027171
ENSMUST00000130075 ENSMUSP00000137867
ENSMUST00000124986 ENSMUSP00000121293
ENSMUST00000150008
ENSMUST00000132949 ENSMUSP00000139878
ENSMUST00000180952 ENSMUSP00000137825
ENSMUST00000191232
ENSMUST00000187978 ENSMUSP00000141169
ENSMUST00000186107 ENSMUSP00000139554
ENSMUST00000186779
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0035865 cellular response to potassium ion
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0061400 positive regulation of transcription from RNA polymerase II promoter in response to calcium ion
GO:0071277 cellular response to calcium ion
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000138380
View Gene Order
ENSBTAG00000016000
Not yet available
Cross-References
SwissProt Q8VHI4
TrEMBL D3Z2W4
UniProt Splice Variant
Entrez Gene 241066
UniGene Mm.370325
RefSeq NM_001285463 NM_001285473 NM_139150 XM_006495972 XM_006495973 XM_006495974 XM_006495975 XM_006495977 XM_006495978
OMIM
CCDS CCDS14989
HPRD
IMGT
MGI ID MGI:2182269
MGI Symbol Carf
EMBL AC116581 AC138597 AF454947 BC138644 BC138645
GenPept AAI38645 AAI38646 AAL62331
RNA Seq Atlas 241066

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca