Version 5.4
Homo sapiens Gene: C5orf42
Summary
InnateDB Gene IDBG-16920.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol C5orf42
Gene Name chromosome 5 open reading frame 42
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000197603
Encoded Proteins
IDBP-365157
chromosome 5 open reading frame 42
IDBP-474346
chromosome 5 open reading frame 42
IDBP-479157
chromosome 5 open reading frame 42
IDBP-474231
chromosome 5 open reading frame 42
IDBP-809036
chromosome 5 open reading frame 42
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary The protein encoded by this gene has putative coiled-coil domains and may be a transmembrane protein. Defects in this gene are a cause of Joubert syndrome (JBTS). [provided by RefSeq, May 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 5:37106228-37249428
Strand Reverse strand
Band p13.2
Transcripts
ENST00000425232 ENSP00000389014
ENST00000508244 ENSP00000421690
ENST00000509849 ENSP00000426337
ENST00000514429 ENSP00000424223
ENST00000512288
ENST00000509957
ENST00000504716
ENST00000505121
ENST00000508405
ENST00000511824 ENSP00000473657
ENST00000511210
ENST00000515380
ENST00000510830
ENST00000511781
ENST00000505431
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 4 [view]
Protein-Protein 4 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
Cellular Component
GO:0016021 integral component of membrane
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000039801
View Gene Order
ENSBTAG00000000586
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.586199
RefSeq NM_023073 XM_006714490
HUGO
OMIM
CCDS CCDS34146
HPRD 07822
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca