Version 5.4
Homo sapiens Gene: SGCB
Summary
InnateDB Gene IDBG-18069.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SGCB
Gene Name sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
Synonyms A3b; LGMD2E; SGC
Species Homo sapiens
Ensembl Gene ENSG00000163069
Encoded Proteins
IDBP-18071
sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
IDBP-480666
sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
IDBP-480531
sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a member of the sarcoglycan family. Sarcoglycans are transmembrane components in the dystrophin-glycoprotein complex which help stabilize the muscle fiber membranes and link the muscle cytoskeleton to the extracellular matrix. Mutations in this gene have been associated with limb-girdle muscular dystrophy.[provided by RefSeq, Oct 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 4:52020706-52038482
Strand Reverse strand
Band q12
Transcripts
ENST00000381431 ENSP00000370839
ENST00000506357 ENSP00000421235
ENST00000514133 ENSP00000425818
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 7 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 7 [view]
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
GO:0007517 muscle organ development
GO:0048747 muscle fiber development
GO:0055013 cardiac muscle cell development
GO:0097084 vascular smooth muscle cell development
Cellular Component
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005887 integral component of plasma membrane
GO:0016010 dystrophin-associated glycoprotein complex
GO:0016011 dystroglycan complex
GO:0016012 sarcoglycan complex
GO:0016021 integral component of membrane
GO:0042383 sarcolemma
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000029156
View Gene Order
ENSBTAG00000014601
Not yet available
Pathways
NETPATH
REACTOME
KEGG
hsa05412
Arrhythmogenic right ventricular cardiomyopathy (ARVC) pathway
hsa05410
Hypertrophic cardiomyopathy (HCM) pathway
hsa05414
Dilated cardiomyopathy pathway
hsa05416
Viral myocarditis pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL H0YA15
UniProt Splice Variant
Entrez Gene 6443
UniGene Hs.438953 Hs.619287 Hs.694498
RefSeq NM_000232 XM_006714046 XM_006714047 XM_006714048
HUGO HGNC:10806
OMIM 600900
CCDS CCDS3488
HPRD 02942
IMGT
EMBL AC093858
GenPept
RNA Seq Atlas 6443

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca