Mus musculus Gene: Col16a1 | |||||||
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Summary | |||||||
InnateDB Gene | IDBG-191869.6 | ||||||
Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||
Gene Symbol | Col16a1 | ||||||
Gene Name | collagen, type XVI, alpha 1 | ||||||
Synonyms | 2700007F12Rik; A530052M23Rik; AI838662; CA1F | ||||||
Species | Mus musculus | ||||||
Ensembl Gene | ENSMUSG00000040690 | ||||||
Encoded Proteins |
collagen, type XVI, alpha 1
collagen, type XVI, alpha 1
collagen, type XVI, alpha 1
collagen, type XVI, alpha 1
collagen, type XVI, alpha 1
collagen, type XVI, alpha 1
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Protein Structure | |||||||
Useful resources | Stemformatics EHFPI ImmGen | ||||||
Entrez Gene | |||||||
Summary |
This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000084636:
This gene encodes the alpha chain of type XVI collagen, a member of the FACIT collagen family (fibril-associated collagens with interrupted helices). Members of this collagen family are found in association with fibril-forming collagens such as type I and II, and serve to maintain the integrity of the extracellular matrix. High levels of type XVI collagen have been found in fibroblasts and keratinocytes, and in smooth muscle and amnion. [provided by RefSeq, Jul 2008] |
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Gene Information | |||||||
Type | Protein coding | ||||||
Genomic Location | Chromosome 4:130047840-130099283 | ||||||
Strand | Forward strand | ||||||
Band | D2.2 | ||||||
Transcripts | |||||||
Interactions | |||||||
Number of Interactions |
This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
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Gene Ontology | |||||||
Molecular Function |
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Biological Process |
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Cellular Component |
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Orthologs | |||||||
Species
Homo sapiens
Bos taurus
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Gene ID
Gene Order
Not yet available
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Pathways | |||||||
NETPATH | |||||||
REACTOME |
Collagen formation pathway
Collagen biosynthesis and modifying enzymes pathway
Extracellular matrix organization pathway
Integrin cell surface interactions pathway
Degradation of the extracellular matrix pathway
Collagen degradation pathway
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KEGG | |||||||
INOH | |||||||
PID NCI | |||||||
Pathway Predictions based on Human Orthology Data | |||||||
NETPATH | |||||||
REACTOME |
Integrin cell surface interactions pathway
Collagen biosynthesis and modifying enzymes pathway
Collagen degradation pathway
Extracellular matrix organization pathway
Degradation of the extracellular matrix pathway
Collagen formation pathway
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KEGG | |||||||
INOH |
Integrin signaling pathway pathway
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PID NCI | |||||||
Cross-References | |||||||
SwissProt | |||||||
TrEMBL | |||||||
UniProt Splice Variant | |||||||
Entrez Gene | |||||||
UniGene | Mm.41860 | ||||||
RefSeq | NM_028266 XM_006502639 XM_006502640 XM_006502641 XM_006502642 XM_006502645 XM_006502646 XM_006502647 XM_006502648 XM_006536938 XM_006536939 XM_006536940 XM_006536943 XM_006536944 XM_006536945 XM_006536946 XM_006536947 | ||||||
OMIM | |||||||
CCDS | CCDS38889 | ||||||
HPRD | |||||||
IMGT | |||||||
MGI ID | |||||||
MGI Symbol | |||||||
EMBL | |||||||
GenPept | |||||||
RNA Seq Atlas | |||||||