Version 5.4
Homo sapiens Gene: COL28A1
Summary
InnateDB Gene IDBG-230641.5
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol COL28A1
Gene Name collagen, type XXVIII, alpha 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000215018
Encoded Proteins
IDBP-230645
collagen, type XXVIII, alpha 1
IDBP-364561
collagen, type XXVIII, alpha 1
IDBP-364563
collagen, type XXVIII, alpha 1
IDBP-364640
collagen, type XXVIII, alpha 1
IDBP-364642
collagen, type XXVIII, alpha 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary COL28A1 belongs to a class of collagens containing von Willebrand factor (VWF; MIM 613160) type A (VWFA) domains (Veit et al., 2006 [PubMed 16330543]).[supplied by OMIM, Nov 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 7:7356203-7535853
Strand Reverse strand
Band p21.3
Transcripts
ENST00000399429 ENSP00000382356
ENST00000430711 ENSP00000413093
ENST00000453441 ENSP00000391380
ENST00000444268 ENSP00000408401
ENST00000435823 ENSP00000410557
ENST00000465339
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
GO:0004867 serine-type endopeptidase inhibitor activity
Biological Process
GO:0007155 cell adhesion
GO:0010951 negative regulation of endopeptidase activity
GO:0030198 extracellular matrix organization
Cellular Component
GO:0005576 extracellular region
GO:0005581 collagen trimer
GO:0005604 basement membrane
GO:0005788 endoplasmic reticulum lumen
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000068794
View Gene Order
ENSBTAG00000024420
Not yet available
Pathways
NETPATH
REACTOME
REACT_121139
Collagen biosynthesis and modifying enzymes pathway
REACT_118779
Extracellular matrix organization pathway
REACT_120729
Collagen formation pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q2UY09
TrEMBL H7BZU0 H7C3P2
UniProt Splice Variant
Entrez Gene 340267
UniGene Hs.732249 Hs.733967
RefSeq NM_001037763
HUGO HGNC:22442
OMIM 609996
CCDS CCDS43553
HPRD
IMGT
EMBL AC004982 AC006356 AC009402 AJ890451 AJ890452 AJ890453 BC136892 CH236948
GenPept AAI36893 CAI67595 CAI67596 CAI67597 EAL24305 EAL24306 EAL24307
RNA Seq Atlas 340267

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca