Version 5.4
Homo sapiens Gene: FAM48A
Summary
InnateDB Gene IDBG-24791.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol FAM48A
Gene Name family with sequence similarity 48, member A
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000102710
Encoded Proteins
IDBP-24793
family with sequence similarity 48, member A
IDBP-24795
family with sequence similarity 48, member A
IDBP-24797
family with sequence similarity 48, member A
IDBP-812820
suppressor of Ty 20 homolog (S. cerevisiae)
IDBP-478252
family with sequence similarity 48, member A
IDBP-481474
family with sequence similarity 48, member A
IDBP-482877
family with sequence similarity 48, member A
IDBP-812822
suppressor of Ty 20 homolog (S. cerevisiae)
IDBP-482949
family with sequence similarity 48, member A
IDBP-591323
family with sequence similarity 48, member A
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 13:37009312-37059713
Strand Reverse strand
Band q13.3
Transcripts
ENST00000356185 ENSP00000348512
ENST00000350612 ENSP00000218894
ENST00000360252 ENSP00000353388
ENST00000490716 ENSP00000473592
ENST00000484078
ENST00000475892 ENSP00000417510
ENST00000472948
ENST00000469488 ENSP00000419787
ENST00000473871
ENST00000464744 ENSP00000419754
ENST00000466563
ENST00000495071 ENSP00000473416
ENST00000493537
ENST00000476539
ENST00000490602
ENST00000478911
ENST00000464572
ENST00000476109
ENST00000483241
ENST00000497318 ENSP00000420170
ENST00000470359
ENST00000471868
ENST00000488590
ENST00000542180 ENSP00000439000
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 13 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 13 [view]
Protein-Protein 13 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003712 transcription cofactor activity
GO:0005515 protein binding
Biological Process
GO:0006325 chromatin organization
GO:0006914 autophagy
GO:0007369 gastrulation
GO:2001141 regulation of RNA biosynthetic process
Cellular Component
GO:0000124 SAGA complex
GO:0070461 SAGA-type complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000027751
View Gene Order
ENSBTAG00000011860
Not yet available
Pathways
NETPATH
REACTOME
REACT_172610
HATs acetylate histones pathway
REACT_172623
Chromatin organization pathway
REACT_172633
Chromatin modifying enzymes pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL C9JQS2
UniProt Splice Variant
Entrez Gene 55578
UniGene Hs.435815 Hs.599329
RefSeq NM_001014286 NM_001278480 NM_001278481 NM_001278482 NM_017569 XM_005266460 XM_005266462 XM_005266465 XM_005266466
HUGO HGNC:20596
OMIM 613417
CCDS CCDS31959 CCDS61311 CCDS9362
HPRD 10135
IMGT
EMBL AL138706 AL391383
GenPept
RNA Seq Atlas 55578

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca