Version 5.4
Mus musculus Gene: C1qtnf5
Summary
InnateDB Gene IDBG-250968.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol C1qtnf5
Gene Name C1q and tumor necrosis factor related protein 5
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000079592
Encoded Proteins
IDBP-250955
C1q and tumor necrosis factor related protein 5
IDBP-250970
C1q and tumor necrosis factor related protein 5
IDBP-250972
C1q and tumor necrosis factor related protein 5
IDBP-250974
C1q and tumor necrosis factor related protein 5
IDBP-535011
C1q and tumor necrosis factor related protein 5
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary The protein encoded by this gene is a member of the C1q/tumor necrosis factor superfamily. This family member is a secretory protein that functions in eye development. Mutations in this gene are thought to underlie the pathophysiology of late-onset retinal degeneration (L-ORD) and early-onset long anterior zonules (LAZ). Bicistronic transcripts composed of the coding sequences for this gene (C1qtnf5) and the membrane-type frizzled-related protein gene (Mfrp) have been identified, and the resulting products can interact with each other. Co-transcription of C1qtnf5 and Mfrp has been observed in both human and mouse. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 9:44107245-44109187
Strand Forward strand
Band A5.1
Transcripts
ENSMUST00000114821 ENSMUSP00000110469
ENSMUST00000114818 ENSMUSP00000110466
ENSMUST00000114816 ENSMUSP00000110464
ENSMUST00000114815 ENSMUSP00000110463
ENSMUST00000152956 ENSMUSP00000123040
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
Biological Process
Cellular Component
GO:0005576 extracellular region
GO:0005581 collagen trimer
GO:0070062 extracellular vesicular exosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000223953
View Gene Order
ENSBTAG00000027766
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene
RefSeq NM_001040631 NM_001040632 NM_001190313 NM_001190319 NM_145613
OMIM
CCDS CCDS52777
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca