Version 5.4
Homo sapiens Gene: PRDM8
Summary
InnateDB Gene IDBG-26470.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PRDM8
Gene Name PR domain containing 8
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000152784
Encoded Proteins
IDBP-26472
PR domain containing 8
IDBP-372493
PR domain containing 8
IDBP-480826
PR domain containing 8
IDBP-483395
PR domain containing 8
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 4:80183879-80204329
Strand Forward strand
Band q21.21
Transcripts
ENST00000339711 ENSP00000339764
ENST00000415738 ENSP00000406998
ENST00000508965
ENST00000509375
ENST00000506547
ENST00000504452 ENSP00000423985
ENST00000511825
ENST00000508061
ENST00000515013 ENSP00000425149
ENST00000507025
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 1 [view]
Protein-DNA 2 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003714 transcription corepressor activity
GO:0005515 protein binding
GO:0042054 histone methyltransferase activity
GO:0046872 metal ion binding
GO:0046974 histone methyltransferase activity (H3-K9 specific)
Biological Process
GO:0006351 transcription, DNA-templated
GO:0016571 histone methylation
GO:0021540 corpus callosum morphogenesis
GO:0021952 central nervous system projection neuron axonogenesis
GO:0021957 corticospinal tract morphogenesis
GO:0022008 neurogenesis
GO:0045892 negative regulation of transcription, DNA-templated
GO:0051567 histone H3-K9 methylation
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000035456
View Gene Order
ENSBTAG00000020570
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.373642
RefSeq NM_001099403 NM_020226 XM_005263144 XM_005263145 XM_005263146 XM_006714279
HUGO
OMIM
CCDS CCDS43243
HPRD 17904
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca