Version 5.4
Homo sapiens Gene: LSM11
Summary
InnateDB Gene IDBG-55713.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol LSM11
Gene Name LSM11, U7 small nuclear RNA associated
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000155858
Encoded Proteins
IDBP-55715
LSM11, U7 small nuclear RNA associated
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 5:157743695-157760709
Strand Forward strand
Band q33.3
Transcripts
ENST00000286307 ENSP00000286307
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 10 experimentally validated interaction(s) in this database.
Experimentally validated
Total 10 [view]
Protein-Protein 10 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0071209 U7 snRNA binding
Biological Process
GO:0000084 mitotic S phase
GO:0006366 transcription from RNA polymerase II promoter
GO:0006369 termination of RNA polymerase II transcription
GO:0006398 histone mRNA 3'-end processing
GO:0008334 histone mRNA metabolic process
GO:0010467 gene expression
GO:0031124 mRNA 3'-end processing
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005683 U7 snRNP
GO:0071204 histone pre-mRNA 3'end processing complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000044847
View Gene Order
ENSBTAG00000010363
Not yet available
Pathways
NETPATH
REACTOME
REACT_185
SLBP independent Processing of Histone Pre-mRNAs pathway
REACT_1364
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs pathway
REACT_387
Cleavage of Growing Transcript in the Termination Region pathway
REACT_894
RNA Polymerase II Transcription Termination pathway
REACT_1366
RNA Polymerase II Transcription pathway
REACT_1768
Processing of Capped Intronless Pre-mRNA pathway
REACT_71
Gene Expression pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt P83369
TrEMBL
UniProt Splice Variant
Entrez Gene 134353
UniGene Hs.23648 Hs.600460 Hs.631954
RefSeq NM_173491
HUGO HGNC:30860
OMIM
CCDS CCDS4342
HPRD
IMGT
EMBL AK095592 BC051353 BC126449
GenPept AAH51353 AAI26450 BAC04581
RNA Seq Atlas 134353

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca