Version 5.4
Homo sapiens Gene: SNRNP25
Summary
InnateDB Gene IDBG-6822.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SNRNP25
Gene Name small nuclear ribonucleoprotein 25kDa (U11/U12)
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000161981
Encoded Proteins
IDBP-6824
small nuclear ribonucleoprotein 25kDa (U11/U12)
IDBP-6826
small nuclear ribonucleoprotein 25kDa (U11/U12)
IDBP-234424
small nuclear ribonucleoprotein 25kDa (U11/U12)
IDBP-360967
small nuclear ribonucleoprotein 25kDa (U11/U12)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Two types of spliceosomes catalyze splicing of pre-mRNAs. The major U2-type spliceosome is found in all eukaryotes and removes U2-type introns, which represent more than 99% of pre-mRNA introns. The minor U12-type spliceosome is found in some eukaryotes and removes U12-type introns, which are rare and have distinct splice consensus signals. The U12-type spliceosome consists of several small nuclear RNAs and associated proteins. This gene encodes a 25K protein that is a component of the U12-type spliceosome. [provided by RefSeq, Apr 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 16:53010-57669
Strand Forward strand
Band p13.3
Transcripts
ENST00000383018 ENSP00000372482
ENST00000293861 ENSP00000293861
ENST00000397876 ENSP00000380974
ENST00000417493 ENSP00000391289
ENST00000493672
ENST00000466183
ENST00000481947
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
Biological Process
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005689 U12-type spliceosomal complex
GO:0005737 cytoplasm
GO:0045171 intercellular bridge
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000040767
View Gene Order
ENSBTAG00000019804
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.15277
RefSeq NM_024571
HUGO
OMIM
CCDS CCDS10396
HPRD 12673
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca