Version 5.4
Homo sapiens Gene: ZIC3
Summary
InnateDB Gene IDBG-87783.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol ZIC3
Gene Name Zic family member 3
Synonyms HTX; HTX1; VACTERLX; ZNF203
Species Homo sapiens
Ensembl Gene ENSG00000156925
Encoded Proteins
IDBP-87785
Zic family member 3
IDBP-87787
Zic family member 3
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a member of the ZIC family of C2H2-type zinc finger proteins. This nuclear protein probably functions as a transcription factor in early stages of left-right body axis formation. Mutations in this gene cause X-linked visceral heterotaxy, which includes congenital heart disease and left-right axis defects in organs. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome X:137566142-137577691
Strand Forward strand
Band q26.3
Transcripts
ENST00000287538 ENSP00000287538
ENST00000370606 ENSP00000359638
ENST00000478471
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
Experimentally validated
Total 4 [view]
Protein-Protein 3 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding
Biological Process
GO:0001947 heart looping
GO:0006351 transcription, DNA-templated
GO:0007368 determination of left/right symmetry
GO:0007389 pattern specification process
GO:0009952 anterior/posterior pattern specification
GO:0030154 cell differentiation
GO:0030324 lung development
GO:0035469 determination of pancreatic left/right asymmetry
GO:0035545 determination of left/right asymmetry in nervous system
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0071907 determination of digestive tract left/right asymmetry
GO:0071910 determination of liver left/right asymmetry
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000067860
View Gene Order
ENSBTAG00000021413
Not yet available
Pathways
NETPATH
REACTOME
REACT_111045
Developmental Biology pathway
REACT_200812
Transcriptional regulation of pluripotent stem cells pathway
REACT_200759
POU5F1 (OCT4), SOX2, NANOG activate genes related to proliferation pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt O60481
TrEMBL
UniProt Splice Variant
Entrez Gene 7547
UniGene Hs.111227 Hs.545976
RefSeq NM_003413
HUGO HGNC:12874
OMIM 300265
CCDS CCDS14663
HPRD
IMGT
EMBL AF028706 AL035443 BC113393 BC113395 EU532020
GenPept AAC05594 AAI13394 AAI13396 ACB30403 CAB41648 CAI42303
RNA Seq Atlas 7547

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca