Version 5.4
Homo sapiens Gene: VPS13D
Summary
InnateDB Gene IDBG-90134.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol VPS13D
Gene Name vacuolar protein sorting 13 homolog D (S. cerevisiae)
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000048707
Encoded Proteins
IDBP-90136
vacuolar protein sorting 13 homolog D (S. cerevisiae)
IDBP-810338
vacuolar protein sorting 13 homolog D (S. cerevisiae)
IDBP-600637
vacuolar protein sorting 13 homolog D (S. cerevisiae)
IDBP-810326
vacuolar protein sorting 13 homolog D (S. cerevisiae)
IDBP-810328
vacuolar protein sorting 13 homolog D (S. cerevisiae)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a protein belonging to the vacuolar-protein-sorting-13 gene family. In yeast, vacuolar-protein-sorting-13 proteins are involved in trafficking of membrane proteins between the trans-Golgi network and the prevacuolar compartment. While several transcript variants may exist for this gene, the full-length natures of only two have been described to date. These two represent the major variants of this gene and encode distinct isoforms. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 1:12230067-12512047
Strand Forward strand
Band p36.22
Transcripts
ENST00000011700 ENSP00000011700
ENST00000476169
ENST00000489961
ENST00000460333
ENST00000487188
ENST00000469054
ENST00000466732 ENSP00000473375
ENST00000476045
ENST00000481484
ENST00000473099
ENST00000543766 ENSP00000441122
ENST00000543710
ENST00000620676 ENSP00000478104
ENST00000613099 ENSP00000482233
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
Biological Process
Cellular Component
GO:0070062 extracellular vesicular exosome
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000020220
View Gene Order
ENSBTAG00000016080
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.439381 Hs.624737
RefSeq NM_015378 NM_018156
HUGO
OMIM
CCDS CCDS30588 CCDS30589
HPRD 10593
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca