InnateDB Protein
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IDBP-144532.6
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Last Modified
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2014-10-13 [Report errors or provide feedback]
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Gene Symbol
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Ddb1
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Protein Name
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damage specific DNA binding protein 1
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Synonyms
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127kDa; AA408517; p127-Ddb1;
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Species
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Mus musculus
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Ensembl Protein
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ENSMUSP00000025649
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InnateDB Gene
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IDBG-144530 (Ddb1)
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Protein Structure
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Function |
Required for DNA repair. Binds to DDB2 to form the UV- damaged DNA-binding protein complex (the UV-DDB complex). The UV- DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. The UV-DDB complex preferentially binds to cyclobutane pyrimidine dimers (CPD), 6-4 photoproducts (6-4 PP), apurinic sites and short mismatches. Also appears to function as a component of numerous distinct DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the DCX E3 ubiquitin- protein ligase complex is determined by the variable substrate recognition component recruited by DDB1. DCX(DDB2) (also known as DDB1-CUL4-ROC1, CUL4-DDB-ROC1 and CUL4-DDB-RBX1) may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair. DCX(DDB2) also ubiquitinates XPC, which may enhance DNA-binding by XPC and promote NER. DCX(DTL) plays a role in PCNA-dependent polyubiquitination of CDT1 and MDM2-dependent ubiquitination of TP53 in response to radiation-induced DNA damage and during DNA replication. DCX(ERCC8) (the CSA complex) plays a role in transcription-coupled repair (TCR). May also play a role in ubiquitination of CDKN1B/p27kip when associated with CUL4 and SKP2 (By similarity). {ECO:0000250}.
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Subcellular Localization |
Cytoplasm {ECO:0000250}. Nucleus {ECO:0000250}. Note=Primarily cytoplasmic. Translocates to the nucleus following UV irradiation and subsequently accumulates at sites of DNA damage (By similarity). {ECO:0000250}.
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Disease Associations |
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Tissue Specificity |
Ubiquitously expressed. Expressed in pregnant, lactating and involuting mammary gland. {ECO:0000269PubMed:10574459}.
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Comments |
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Number of Interactions
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This gene and/or its encoded proteins are associated with 42 experimentally validated interaction(s) in this database.
They are also associated with 207 interaction(s) predicted by orthology.
Experimentally validated |
Total |
42
[view]
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Protein-Protein |
42
[view]
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Protein-DNA |
0
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Protein-RNA |
0
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DNA-DNA |
0
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RNA-RNA |
0
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DNA-RNA |
0
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Predicted by orthology |
Total |
207 [view]
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Molecular Function |
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Biological Process |
GO:0006281
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DNA repair
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GO:0016055
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Wnt signaling pathway
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GO:0035518
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histone H2A monoubiquitination
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GO:0042787
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protein ubiquitination involved in ubiquitin-dependent protein catabolic process
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GO:0043066
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negative regulation of apoptotic process
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GO:0043161
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proteasome-mediated ubiquitin-dependent protein catabolic process
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GO:0070914
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UV-damage excision repair
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GO:1901990
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regulation of mitotic cell cycle phase transition
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Cellular Component |
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PDB ID |
MGI:1202384
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InterPro |
IPR004871
Cleavage/polyadenylation specificity factor, A subunit, C-terminal
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PFAM |
PF03178
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PRINTS |
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PIRSF |
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SMART |
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TIGRFAMs |
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Modification |
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SwissProt |
Q3U1J4
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PhosphoSite |
PhosphoSite-Q3U1J4
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TrEMBL |
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UniProt Splice Variant |
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Entrez Gene |
13194
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UniGene |
Mm.473605
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RefSeq |
NP_056550
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MGI ID |
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MGI Symbol |
Ddb1
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OMIM |
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CCDS |
CCDS37915
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HPRD |
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IMGT |
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EMBL |
AB026432
AF159853
AK146522
AK152228
AK154303
AK155020
AK155920
AK157491
BC002210
BC009661
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GenPept |
AAD42230
AAH02210
AAH09661
BAA84699
BAE27231
BAE31055
BAE32502
BAE32993
BAE33503
BAE34102
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