Version 5.4
Mus musculus Protein: Prpf38a
Summary
InnateDB Protein IDBP-173192.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Prpf38a
Protein Name PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Synonyms
Species Mus musculus
Ensembl Protein ENSMUSP00000078207
InnateDB Gene IDBG-173190 (Prpf38a)
Protein Structure
UniProt Annotation
Function May be required for pre-mRNA splicing. {ECO:0000305}.
Subcellular Localization Nucleus {ECO:0000305}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 16 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 16 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006397 mRNA processing
GO:0008150 biological_process
GO:0008380 RNA splicing
Cellular Component
GO:0005575 cellular_component
GO:0005681 spliceosomal complex
Protein Structure and Domains
PDB ID MGI:1916962
InterPro IPR005037 Pre-mRNA-splicing factor 38
PFAM PF03371
PRINTS
PIRSF
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q4FK66
PhosphoSite PhosphoSite-Q4FK66
TrEMBL B2RTE3
UniProt Splice Variant
Entrez Gene 230596
UniGene Mm.475336
RefSeq NP_766285
MGI ID
MGI Symbol Prpf38a
OMIM
CCDS CCDS18452
HPRD
IMGT
EMBL AK075925 AK169741 AL626783 BC059875 BC139277 BC139305 CH466527 CT010186
GenPept AAH59875 AAI39278 AAI39306 BAC36057 BAE41341 CAJ18394 CAM23500 EDL30740

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca