Version 5.4
Homo sapiens Protein: CSDE1
Summary
InnateDB Protein IDBP-387860.4
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol CSDE1
Protein Name cold shock domain containing E1, RNA-binding
Synonyms D1S155E; UNR;
Species Homo sapiens
Ensembl Protein ENSP00000407724
InnateDB Gene IDBG-101304 (CSDE1)
Protein Structure
UniProt Annotation
Function
Subcellular Localization
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 31 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 31 [view]
Protein-Protein 27 [view]
Protein-DNA 4 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0008584 male gonad development
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay
Cellular Component
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0070937 CRD-mediated mRNA stability complex
Protein Structure and Domains
PDB ID
InterPro IPR002059 Cold-shock protein, DNA-binding
IPR011129 Cold shock protein
IPR012340 Nucleic acid-binding, OB-fold
PFAM PF00313
PRINTS PR00050
PIRSF
SMART SM00357
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt O75534
PhosphoSite PhosphoSite-O75534
TrEMBL Q9UG93
UniProt Splice Variant
Entrez Gene 7812
UniGene Hs.737558
RefSeq
HUGO HGNC:29905
OMIM 191510
CCDS CCDS55626
HPRD 15949
IMGT
EMBL AB020692 AF070542 AF077054 AK290146 AL050150 AL096773 BC032446 CH471122 CR749378 CR749431
GenPept AAC28634 AAD27787 AAH32446 BAA74908 BAF82835 CAB43294 CAH18231 CAH18269 CAI18825 CAI18826 EAW56612 EAW56615 EAW56616

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca