Homo sapiens Protein: POLR3B | |||||||||||||||||||||
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Summary | |||||||||||||||||||||
InnateDB Protein | IDBP-54800.6 | ||||||||||||||||||||
Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||||||||||||||||
Gene Symbol | POLR3B | ||||||||||||||||||||
Protein Name | polymerase (RNA) III (DNA directed) polypeptide B | ||||||||||||||||||||
Synonyms | |||||||||||||||||||||
Species | Homo sapiens | ||||||||||||||||||||
Ensembl Protein | ENSP00000228347 | ||||||||||||||||||||
InnateDB Gene | IDBG-54798 (POLR3B) | ||||||||||||||||||||
Protein Structure | |||||||||||||||||||||
UniProt Annotation | |||||||||||||||||||||
Function | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft (By similarity). Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts, such as Epstein-Barr virus-encoded RNAs (EBERs) induce type I interferon and NF- Kappa-B through the RIG-I pathway. {ECO:0000250, ECO:0000269PubMed:19609254, ECO:0000269PubMed:19631370}. | ||||||||||||||||||||
Subcellular Localization | Nucleus {ECO:0000250}. | ||||||||||||||||||||
Disease Associations | Leukodystrophy, hypomyelinating, 8, with or without oligodontia and/or hypogonadotropic hypogonadism (HLD8) [MIM:614381]: An autosomal recessive neurodegenerative disorder characterized by early childhood onset of cerebellar ataxia and mild intellectual disabilities associated with diffuse hypomyelination apparent on brain MRI. Variable features include oligodontia and/or hypogonadotropic hypogonadism. {ECO:0000269PubMed:22036171, ECO:0000269PubMed:22036172}. Note=The disease is caused by mutations affecting the gene represented in this entry. | ||||||||||||||||||||
Tissue Specificity | |||||||||||||||||||||
Comments | |||||||||||||||||||||
Interactions | |||||||||||||||||||||
Number of Interactions |
This gene and/or its encoded proteins are associated with 18 experimentally validated interaction(s) in this database.
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Gene Ontology | |||||||||||||||||||||
Molecular Function |
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Biological Process |
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Cellular Component |
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Protein Structure and Domains | |||||||||||||||||||||
PDB ID | |||||||||||||||||||||
InterPro |
IPR007120
DNA-directed RNA polymerase, subunit 2, domain 6 IPR007641 RNA polymerase Rpb2, domain 7 IPR007642 RNA polymerase Rpb2, domain 2 IPR007644 RNA polymerase, beta subunit, protrusion IPR007645 RNA polymerase Rpb2, domain 3 IPR007646 RNA polymerase Rpb2, domain 4 IPR007647 RNA polymerase Rpb2, domain 5 |
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PFAM |
PF00562
PF04560 PF04561 PF04563 PF04565 PF04566 PF04567 |
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PRINTS | |||||||||||||||||||||
PIRSF | |||||||||||||||||||||
SMART | |||||||||||||||||||||
TIGRFAMs | |||||||||||||||||||||
Post-translational Modifications | |||||||||||||||||||||
Modification | |||||||||||||||||||||
Cross-References | |||||||||||||||||||||
SwissProt | Q9NW08 | ||||||||||||||||||||
PhosphoSite | PhosphoSite-Q9NW08 | ||||||||||||||||||||
TrEMBL | F8VRU2 | ||||||||||||||||||||
UniProt Splice Variant | |||||||||||||||||||||
Entrez Gene | 55703 | ||||||||||||||||||||
UniGene | Hs.62696 | ||||||||||||||||||||
RefSeq | NP_060552 | ||||||||||||||||||||
HUGO | HGNC:30348 | ||||||||||||||||||||
OMIM | 614366 | ||||||||||||||||||||
CCDS | CCDS9105 | ||||||||||||||||||||
HPRD | 11447 | ||||||||||||||||||||
IMGT | |||||||||||||||||||||
EMBL | AC009721 AC078992 AC080012 AK001161 AK001250 AK092031 AK122713 AK291635 AY092084 BC046238 CH471054 | ||||||||||||||||||||
GenPept | AAH46238 AAM18214 BAA91527 BAA91581 BAF84324 BAG52470 BAG53685 EAW97780 | ||||||||||||||||||||