Version 5.4
Homo sapiens Gene: TRIM17
Summary
InnateDB Gene IDBG-107252.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol TRIM17
Gene Name tripartite motif containing 17
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000162931
Encoded Proteins
IDBP-107254
tripartite motif containing 17
IDBP-107256
tripartite motif containing 17
IDBP-107258
tripartite motif containing 17
IDBP-107260
tripartite motif containing 17
IDBP-390115
tripartite motif containing 17
IDBP-390116
tripartite motif containing 17
IDBP-484866
tripartite motif containing 17
IDBP-481245
tripartite motif containing 17
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to cytoplasmic bodies. The protein is expressed almost exclusively in the testis, but its function is unknown. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 1:228407940-228416861
Strand Reverse strand
Band q42.13
Transcripts
ENST00000295033 ENSP00000295033
ENST00000366698 ENSP00000355659
ENST00000366697 ENSP00000355658
ENST00000355586 ENSP00000347794
ENST00000457345 ENSP00000397688
ENST00000456946 ENSP00000403312
ENST00000479800 ENSP00000430468
ENST00000520264 ENSP00000429555
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 24 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 24 [view]
Protein-Protein 24 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0051865 protein autoubiquitination
Cellular Component
GO:0005575 cellular_component
GO:0005622 intracellular
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000036964
View Gene Order
ENSBTAG00000018673
Not yet available
Cross-References
SwissProt Q9Y577
TrEMBL B7ZAR4 E5RI62 E5RJW6 J3KNZ3 J3KQG0
UniProt Splice Variant
Entrez Gene 51127
UniGene Hs.121748
RefSeq NM_001134855 NM_001024940 NM_016102
HUGO HGNC:13430
OMIM 606123
CCDS CCDS44327 CCDS1571
HPRD 05839
IMGT
EMBL AF156271 AK301105 AK316379 AL139288 AL670729 BC033788
GenPept AAD40286 AAH33788 BAG62704 BAH14750 CAH71674 CAI23334
RNA Seq Atlas 51127

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca