Version 5.4
Mus musculus Gene: Trim17
Summary
InnateDB Gene IDBG-177642.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Trim17
Gene Name tripartite motif-containing 17
Synonyms Rnf16; terf
Species Mus musculus
Ensembl Gene ENSMUSG00000036964
Encoded Proteins
IDBP-177644
tripartite motif-containing 17
IDBP-177646
tripartite motif-containing 17
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000162931:
The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to cytoplasmic bodies. The protein is expressed almost exclusively in the testis, but its function is unknown. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 11:58954685-58973098
Strand Forward strand
Band B1.3
Transcripts
ENSMUST00000047697 ENSMUSP00000037248
ENSMUST00000075141 ENSMUSP00000074639
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 16 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 16 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0051865 protein autoubiquitination
Cellular Component
GO:0005575 cellular_component
GO:0005622 intracellular
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000162931
View Gene Order
ENSBTAG00000018673
Not yet available
Cross-References
SwissProt Q7TPM3
TrEMBL A2AB81
UniProt Splice Variant
Entrez Gene 56631
UniGene Mm.179733 Mm.460331 Mm.462157
RefSeq NM_031172 XM_006533811 XM_006533812
OMIM
CCDS CCDS24756
HPRD
IMGT
MGI ID MGI:1861440
MGI Symbol Trim17
EMBL AF220135 AL662809 BC055112
GenPept AAG53508 AAH55112 CAM24487
RNA Seq Atlas 56631

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca