Version 5.4
Mus musculus Gene: Rbm3
Summary
InnateDB Gene IDBG-130201.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rbm3
Gene Name RNA binding motif protein 3
Synonyms 2600016C11Rik
Species Mus musculus
Ensembl Gene ENSMUSG00000031167
Encoded Proteins
IDBP-130203
RNA binding motif protein 3
IDBP-249241
RNA binding motif protein 3
IDBP-249245
RNA binding motif protein 3
IDBP-249247
RNA binding motif protein 3
IDBP-249249
RNA binding motif protein 3
IDBP-249251
RNA binding motif protein 3
IDBP-789619
RNA binding motif protein 3
IDBP-789620
RNA binding motif protein 3
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome X:8138975-8145880
Strand Reverse strand
Band A1.1
Transcripts
ENSMUST00000040010 ENSMUSP00000038964
ENSMUST00000115621 ENSMUSP00000111284
ENSMUST00000115619 ENSMUSP00000111282
ENSMUST00000115617 ENSMUSP00000111280
ENSMUST00000115616 ENSMUSP00000111279
ENSMUST00000115615 ENSMUSP00000111277
ENSMUST00000155599
ENSMUST00000129947 ENSMUSP00000138456
ENSMUST00000141925
ENSMUST00000141629 ENSMUSP00000138705
ENSMUST00000145450
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 6 experimentally validated interaction(s) in this database.
Experimentally validated
Total 6 [view]
Protein-Protein 6 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0043023 ribosomal large subunit binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006412 translation
GO:0006417 regulation of translation
GO:0009409 response to cold
GO:0035196 production of miRNAs involved in gene silencing by miRNA
GO:0045727 positive regulation of translation
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0015934 large ribosomal subunit
GO:0030425 dendrite
Orthologs
No orthologs found for this gene
Cross-References
SwissProt O89086
TrEMBL Q545K5
UniProt Splice Variant
Entrez Gene 19652
UniGene Mm.360569 Mm.414197 Mm.467715 Mm.488537 Mm.489887
RefSeq NM_001166409 NM_001166410 NM_001166411 NM_016809 XM_003945622
OMIM
CCDS CCDS52988 CCDS29987
HPRD
IMGT
MGI ID MGI:1099460
MGI Symbol Rbm3
EMBL AB016424 AK003720 AK007354 AK133795 AK154044 AK167800 AY052560 BC006580 BC106176 CH466638
GenPept AAH06580 AAI06177 AAL10707 BAA32060 BAB22957 BAB24981 BAE21846 BAE32335 BAE39828 EDL33951 EDL33956
RNA Seq Atlas 100043257 19652

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca