Version 5.4
Mus musculus Gene: Sytl5
Summary
InnateDB Gene IDBG-131356.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Sytl5
Gene Name synaptotagmin-like 5
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000054453
Encoded Proteins
IDBP-131290
synaptotagmin-like 5
IDBP-131358
synaptotagmin-like 5
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000147041:
The protein encoded by this gene belongs to the synaptotagmin-like (Slp) protein family, which contains a unique homology domain at the N-terminus, referred to as the Slp homology domain (SHD). The SHD functions as a binding site for Rab27A, which plays a role in protein transport. Expression of this gene is restricted to placenta and liver, suggesting that it might be involved in Rab27A-dependent membrane trafficking in specific tissues. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome X:9885622-9994543
Strand Forward strand
Band A1.1
Transcripts
ENSMUST00000086165 ENSMUSP00000083339
ENSMUST00000067529 ENSMUSP00000064826
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0017137 Rab GTPase binding
GO:0046872 metal ion binding
Biological Process
GO:0006886 intracellular protein transport
GO:0006887 exocytosis
Cellular Component
GO:0016020 membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000147041
View Gene Order
ENSBTAG00000004955
Not yet available
Cross-References
SwissProt Q80T23
TrEMBL
UniProt Splice Variant
Entrez Gene 236643
UniGene Mm.246606
RefSeq NM_001290728 XM_006527610 NM_177704 XM_006527604 XM_006527605 XM_006527606 XM_006527607 XM_006527608 XM_006527609
OMIM
CCDS CCDS72342 CCDS40860
HPRD
IMGT
MGI ID MGI:2668451
MGI Symbol Sytl5
EMBL AB098160 AB098161 AL672031
GenPept BAC57421 BAC57422 CAM24185
RNA Seq Atlas 236643

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca