Version 5.4
Mus musculus Gene: Hdac9
Summary
InnateDB Gene IDBG-134566.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Hdac9
Gene Name histone deacetylase 9
Synonyms AV022454; D030072B18Rik; HD7B; HD9; Hdac7b; HDRP; Mitr; mKIAA0744
Species Mus musculus
Ensembl Gene ENSMUSG00000004698
Encoded Proteins
IDBP-259435
histone deacetylase 9
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 12:34371503-34528889
Strand Reverse strand
Band A3
Transcripts
ENSMUST00000110819 ENSMUSP00000106443
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 10 experimentally validated interaction(s) in this database.
Experimentally validated
Total 10 [view]
Protein-Protein 10 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003714 transcription corepressor activity
GO:0004407 histone deacetylase activity
GO:0005080 protein kinase C binding
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0033558 protein deacetylase activity
GO:0042826 histone deacetylase binding
GO:0070491 repressing transcription factor binding
Biological Process
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006954 inflammatory response
GO:0007399 nervous system development
GO:0007507 heart development
GO:0016568 chromatin modification
GO:0016575 histone deacetylation
GO:0030183 B cell differentiation
GO:0032869 cellular response to insulin stimulus
GO:0034983 peptidyl-lysine deacetylation
GO:0042113 B cell activation
GO:0045843 negative regulation of striated muscle tissue development
GO:0045892 negative regulation of transcription, DNA-templated
GO:0048742 regulation of skeletal muscle fiber development
GO:0051153 regulation of striated muscle cell differentiation
GO:0070932 histone H3 deacetylation
GO:0070933 histone H4 deacetylation
GO:0090050 positive regulation of cell migration involved in sprouting angiogenesis
Cellular Component
GO:0000118 histone deacetylase complex
GO:0005634 nucleus
GO:0005667 transcription factor complex
GO:0005737 cytoplasm
GO:0035097 histone methyltransferase complex
Orthologs
No orthologs found for this gene
Pathways
NETPATH
REACTOME
KEGG
INOH
INOH website
TGF-beta signaling pathway
PID NCI
Cross-References
SwissProt Q99N13
TrEMBL
UniProt Splice Variant
Entrez Gene 79221
UniGene Mm.310551
RefSeq NM_024124 XM_006515273
OMIM
CCDS CCDS36432
HPRD
IMGT
MGI ID MGI:1931221
MGI Symbol Hdac9
EMBL AF235053 AF279371 AF324492 BC098187
GenPept AAG48332 AAH98187 AAK15027 AAL86358
RNA Seq Atlas 79221

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca